Cba_g67848


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g67848

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00062930 EMB2261,... Pentatricopeptide repeat-containing protein At3g49170,... 0.02 OrthoFinder output from all 47 species
AT1G47580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g048131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11263 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g24804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13967 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31194 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06074 No alias RNA editing factor *(OTP87) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g16161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36874 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37112 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g43028 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20132 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22058 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31176 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67763 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g27755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06831 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03570 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26464 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42122 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031251001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
LOC_Os01g10800.1 DOT4, LOC_Os01g10800 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.02 OrthoFinder output from all 47 species
Len_g04697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18938 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g33285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05718 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08499 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08298 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16457 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g41721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07300 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12909 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19780 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26958 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12208 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13050 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57723 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12890 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42323 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008817 CRR22 not classified & original description: CDS=1-2019 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019270 No alias not classified & original description: CDS=1-1617 0.04 OrthoFinder output from all 47 species
Sam_g13068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo102603 CRR2 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Smo113567 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Smo130516 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Smo173139 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Spa_g01958 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16117 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g43840 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50618 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007462_P001 Zm00001e007462 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e022253_P001 Zm00001e022253 Pentatricopeptide repeat-containing protein At1g59720,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 338 362
IPR002885 Pentatricopeptide_repeat 265 293
IPR002885 Pentatricopeptide_repeat 237 260
IPR002885 Pentatricopeptide_repeat 364 410
IPR002885 Pentatricopeptide_repeat 162 210
No external refs found!