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  5. Cba_g67832

Cba_g67832


Description : not classified & original description: none


Gene families : OG0001662 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001662_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g67832

Target Alias Description ECC score Gene Family Method Actions
AT5G67340 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Azfi_s0288.g063259 No alias E3 ubiquitin ligase & original description: CDS=563-3001 0.03 OrthoFinder output from all 47 species
Ehy_g02899 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000169001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_24127 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10426386g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g07620.1 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14832 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09758 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g014230.4.1 Solyc01g014230 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g025270.3.1 Solyc09g025270 U-box domain-containing protein 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g100000.3.1 Solyc12g100000 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g16420 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 2 45
IPR000225 Armadillo 310 347
No external refs found!