Cba_g67244


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g67244

Target Alias Description ECC score Gene Family Method Actions
Adi_g014847 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g065636 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05826 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21523 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19099 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0229.g059123 No alias not classified & original description: CDS=1-2415 0.03 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s0551.g076611 No alias not classified & original description: CDS=1-2037 0.04 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Azfi_s2487.g111794 No alias not classified & original description: CDS=200-2266 0.04 OrthoFinder output from all 47 species
Cba_g05835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G030900.1 CRR22, Ceric.03G030900 not classified & original description: pacid=50573050... 0.03 OrthoFinder output from all 47 species
Ceric.11G019200.1 Ceric.11G019200 not classified & original description: pacid=50596467... 0.04 OrthoFinder output from all 47 species
Ceric.11G091700.1 Ceric.11G091700 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G089400.1 Ceric.21G089400 not classified & original description: pacid=50603367... 0.04 OrthoFinder output from all 47 species
Ceric.25G001500.1 Ceric.25G001500 not classified & original description: pacid=50593180... 0.03 OrthoFinder output from all 47 species
Ceric.31G051800.1 Ceric.31G051800 not classified & original description: pacid=50574746... 0.02 OrthoFinder output from all 47 species
Ceric.34G015500.1 OTP84, Ceric.34G015500 not classified & original description: pacid=50623596... 0.03 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dac_g13741 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g30749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12223 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13947 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16778 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21594 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26505 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28104 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19389 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04862 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g62227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05188 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43486 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005759 No alias not classified & original description: CDS=1-3063 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006820 No alias not classified & original description: CDS=1-3141 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007863 No alias not classified & original description: CDS=1-2721 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021475 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2172 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0238.g026585 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2277 0.02 OrthoFinder output from all 47 species
Sam_g27503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18575 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34089 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 495 520
IPR002885 Pentatricopeptide_repeat 150 175
IPR002885 Pentatricopeptide_repeat 384 404
IPR002885 Pentatricopeptide_repeat 620 668
IPR002885 Pentatricopeptide_repeat 176 222
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 521 567
IPR002885 Pentatricopeptide_repeat 75 121
IPR002885 Pentatricopeptide_repeat 410 456
No external refs found!