Cba_g66001

Description : MRM2-type rRNA methyltransferase & original description: none

Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g66001
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
AT4G25730	No alias	FtsJ-like methyltransferase family protein	0.03	OrthoFinder output from all 47 species
Cre12.g529500	No alias	No description available	0.01	OrthoFinder output from all 47 species
LOC_Os05g49230.1	LOC_Os05g49230	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Len_g20213	No alias	MRM2-type rRNA methyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g02148	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
MA_10429557g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_158214g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Ore_g20920	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g046930.3.1	Solyc10g046930	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Tin_g15529	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	HCCA
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
MF	GO:0008192	RNA guanylyltransferase activity	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
MF	GO:0070568	guanylyltransferase activity	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002877	RNA_MeTrfase_FtsJ_dom	24	202
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	236	384
IPR012920	rRNA_MeTfrase_SPB1-like_C	597	787

External Links

No external refs found!

Cba_g66001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation