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  5. Cba_g62113

Cba_g62113


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0006591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g62113
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 OrthoFinder output from all 47 species
Aop_g11417 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene44048.t1 Aspi01Gene44048 plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.03 OrthoFinder output from all 47 species
Gb_28778 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Msp_g11145 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Pir_g17797 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g13097 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021240 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP HCCA
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 341 400
IPR002885 Pentatricopeptide_repeat 206 263
IPR002885 Pentatricopeptide_repeat 496 522
IPR002885 Pentatricopeptide_repeat 285 330
IPR002885 Pentatricopeptide_repeat 422 470
No external refs found!