Cba_g60010 (UPF1, ATUPF1, LBA1)

Aliases : UPF1, ATUPF1, LBA1

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none

Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g60010

Target	Alias	Description	ECC score	Gene Family Method
Ala_g33995	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g12522	UPF1, ATUPF1, LBA1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g12727	UPF1, ATUPF1, LBA1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g22041	UPF1, ATUPF1, LBA1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g20630	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Nbi_g13849	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001267	MAA3	not classified & original description: CDS=1577-2170	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018999	UPF1_CH/ZBD	149	302
IPR040812	UPF1_1B_dom	354	443
IPR041679	DNA2/NAM7-like_C	712	907
IPR041677	DNA2/NAM7_AAA_11	605	702
IPR006935	Helicase/UvrB_N	501	566

External Links

No external refs found!