MA_203992g0010


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_203992g0010
Cluster HCCA cluster: Cluster_459

Target Alias Description ECC score Gene Family Method Actions
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT4G13210 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT5G48900 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT5G55720 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01003984001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01007582001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01008053001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01011348001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01020067001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01020068001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os02g12300 Os02g0214400 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os04g05050 Os04g0137201 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os06g05260 Os06g0144900 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Smo407495 PACid_15419124 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc02g087670.3.1 Solyc02g087670.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc09g091430.3.1 Solyc09g091430.3 10.6.3 cell wall.degradation.pectate lyases and... 0.01 Gene family
Zm00001d000216 GRMZM2G323418 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Zm00001d036158 GRMZM2G364349 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 167 330
No external refs found!