Cba_g56659 (PUB26)

Aliases : PUB26

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g56659

Target	Alias	Description	ECC score	Gene Family Method
AT3G18710	PUB29, ATPUB29	plant U-box 29	0.08	OrthoFinder output from all 47 species
AT3G19380	PUB25	plant U-box 25	0.04	OrthoFinder output from all 47 species
Ceric.08G065500.1	PUB26, Ceric.08G065500	U-Box-group-III E3 ubiquitin ligase & original...	0.05	OrthoFinder output from all 47 species
Dcu_g11691	PUB26	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g18955	PUB26	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Dde_g24916	PUB25	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g14998	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16356	PUB22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18076	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g21913	PUB26	not classified & original description: none	0.09	OrthoFinder output from all 47 species
GSVIVT01026764001	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Len_g17323	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
MA_10432981g0010	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_415393g0010	PUB25	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_9494855g0010	PUB26	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Ore_g08919	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11257	PUB26	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g34239	No alias	E3 ubiquitin ligase & original description: none	0.17	OrthoFinder output from all 47 species
Pnu_g12004	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Pnu_g19356	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc11g005700.1.1	CMPG2, ATCMPG2,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Spa_g03410	PUB26	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e002598_P001	Zm00001e002598	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e015763_P001	Zm00001e015763	U-box domain-containing protein 21 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Zm00001e039417_P001	PUB23, Zm00001e039417	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e041397_P001	PUB23, Zm00001e041397	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	84

External Links

No external refs found!

Cba_g56659 (PUB26)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation