1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g53005

Cba_g53005 (QRT3)


Aliases : QRT3

Description : polygalacturonase *(QRT3) & original description: none


Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g53005

Target Alias Description ECC score Gene Family Method Actions
AT4G20050 QRT3 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g27397 QRT3 polygalacturonase *(QRT3) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g35331 QRT3 polygalacturonase *(QRT3) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010377 QRT3 polygalacturonase *(QRT3) & original description: CDS=62-1624 0.06 OrthoFinder output from all 47 species
Ceric.21G028100.1 QRT3, Ceric.21G028100 polygalacturonase *(QRT3) & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01029528001 QRT3 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
MA_23603g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_739517g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_917578g0010 QRT3 polygalacturonase (QRT3) 0.03 OrthoFinder output from all 47 species
Tin_g44469 QRT3 polygalacturonase *(QRT3) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!