Cba_g51488

Description : uridine 5-carboxymethylaminomethyl modification enzyme *(TrmE) & original description: none

Gene families : OG0006066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006066_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g51488

Target	Alias	Description	ECC score	Gene Family Method
Als_g52362	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Aspi01Gene13988.t1	Aspi01Gene13988	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.23G016700.1	Ceric.23G016700	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Dcu_g10184	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
GSVIVT01008990001	No alias	No description available	0.03	OrthoFinder output from all 47 species
MA_10428042g0020	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp6g05040.1	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Nbi_g26361	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Tin_g43832	No alias	uridine 5-carboxymethylaminomethyl modification enzyme...	0.03	OrthoFinder output from all 47 species
Zm00001e022362_P004	Zm00001e022362	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025867	MnmE_helical	235	570
IPR018948	GTP-bd_TrmE_N	104	232
IPR006073	GTP-bd	329	450

External Links

No external refs found!