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  5. Adi_g099029

Adi_g099029 (LHCB3*1, LHCB3)


Aliases : LHCB3*1, LHCB3

Description : not classified & original description: none


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g099029
Cluster HCCA: Cluster_7

Solyc04g008900.4.1 expression profile
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  2. Expression Profile
  3. Solyc04g008900.4.1

Expression profile for Solyc04g008900.4.1 (Solyc04g008900.4.1)

Aliases : Solyc04g008900

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 114.0)

Tissue Specificity: Female (SPM: 0.8, entropy: 2.13, tau: 0.84)

All conditions


Tissue Specificity

Note: SPM calculations for this profile are done using the maximum value.


Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00069900 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
AMTR_s00099p00139960 LHCB5,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AMTR_s00153p00078810 LHCB3*1, LHCB3,... Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
AMTR_s00189p00032350 LHCB1.3, CAB140,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.04 OrthoFinder output from all 47 species
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.03 OrthoFinder output from all 47 species
Ala_g06137 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06102 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g02738 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g02850 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04833 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g28157 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12114 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g14660 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aop_g16137 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g16485 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g21318 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.07 OrthoFinder output from all 47 species
Aop_g28499 CAB3, AB180, LHCB1.2 component *(LHCb1/2/3) of LHC-II complex & original... 0.06 OrthoFinder output from all 47 species
Aop_g69021 CAB3, AB180, LHCB1.2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene10234.t1 LHCB5, Aspi01Gene10234 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31128.t1 LHCB3*1, LHCB3,... component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene35945.t1 LHCB5, Aspi01Gene35945 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013388 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species