Expression profile for LOC_Os04g27400 (LOC_Os04g27400)


Attention: This gene has low abundance.

Aliases : Os04g0341800

Description : 16.1.5 secondary metabolism.isoprenoids.terpenoids In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.

Condition specificity: Seedling (SPM: 0.98, entropy: 0.49, tau: 0.99)
Tissue Specificity: Seedling (SPM: 0.99, entropy: 1.09, tau: 0.98)
Comparative Profile: Roots/rhizoids (SPM: 0.98, entropy: 1.5, tau: 0.94)

All conditions


Tissue Specificity

Note: SPM calculations for this profile are done using the maximum value.


Comparative Profile

Note: SPM calculations for this profile are done using the maximum value.