Sequence Description Alias PCC hrr GSVIVT01017821001 0.8744680613759092 2 GSVIVT01012044001 0.8699100680454397 5 GSVIVT01009206001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL2 0.866013497000732 6 GSVIVT01000922001 0.8619359491375629 11 GSVIVT01017820001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor SYD, CHR3 0.8586020287496449 6 GSVIVT01029442001 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2 0.8583327025463455 18 GSVIVT01026933001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP 0.858003628300592 17 GSVIVT01011619001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2 0.8534355786620099 23 GSVIVT01009695001 0.8528338531186417 23 GSVIVT01018721001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.8500070317453305 12 GSVIVT01019359001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1) BTAF1, RGD3, CHA16, ATBTAF1, CHR16 0.8491000383399796 35 GSVIVT01036698001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.8487715051085799 47 GSVIVT01031879001 Protein modification.phosphorylation.atypical kinase families.PIKK kinase TOR 0.8458672958543858 21 GSVIVT01018154001 MEE44 0.8442890132691445 14 GSVIVT01034169001 Protein degradation.N-end rule pathway of targeted proteolysis.N-recognin-mediated ubiquitination.type-I-residues E3 ubiquitin ligase (PRT6) PRT6 0.8416644616783173 15 GSVIVT01025508001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.NUP214 nucleoporin emb1011 0.8405420090497056 16 GSVIVT01007875001 DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana 0.8377201031429121 17 GSVIVT01034941001 emb1441 0.8371940466147582 18 GSVIVT01033231001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80 0.836842329014166 44 GSVIVT01007885001 0.836122390130003 42 GSVIVT01010842001 Flowering time control protein FPA OS=Arabidopsis thaliana FPA 0.8347524249242598 21 GSVIVT01025470001 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease EMB80, EMB1275, DEK1, ATDEK1 0.8337416976935755 81 GSVIVT01016353001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component 0.8337303657217716 25 GSVIVT01004716001 G2484-1, ATG2484-1 0.8331326901353743 41 GSVIVT01029557001 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) 0.8331131858930448 25 GSVIVT01008079001 0.8322718240760395 26 GSVIVT01037040001 Multi-process regulation.TOR signalling pathway.TORC complex.TOR kinase component TOR 0.8319960669227274 27 GSVIVT01024708001 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain 0.8315511388495092 34 GSVIVT01030649001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG2, ATXR3 0.8298227069743722 49 GSVIVT01022139001 0.8277053943136771 30 GSVIVT01013247001 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).UPF1 effector protein UPF1, ATUPF1, LBA1 0.8256261641598883 31 GSVIVT01000874001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.8231298734887584 32 GSVIVT01016794001 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1) 0.8230631785289658 33 GSVIVT01019366001 0.8222933710419015 52 GSVIVT01007806001 0.8219947120282038 35 GSVIVT01008802001 RNA processing.RNA decay.exosome complex.associated co-factors.SOP1 RNA degradation surveillance factor 0.8214266695536493 36 GSVIVT01026952001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor CHA2, CHR2, BRM, ATBRM 0.8207621236791366 49 GSVIVT01003381001 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component ALA3 0.8203366240913633 38 GSVIVT01020162001 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component EMB2016 0.8202637148805753 39 GSVIVT01023517001 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor PKDM7D 0.8195188360518084 40 GSVIVT01005756001 0.8194469368335304 41 GSVIVT01032923001 0.818006363662806 42 GSVIVT01022256001 0.8167651765220187 43 GSVIVT01005092001 0.8166298773631379 44 GSVIVT01009834001 Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana LDL3 0.8166264640324704 45 GSVIVT01000835001 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.MAC7 component EMB2765 0.8151662630275631 63 GSVIVT01036514001 0.8149585121669795 47 GSVIVT01007917001 0.8129086689612538 56 GSVIVT01025465001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component GCT 0.8118162951892752 49 GSVIVT01028685001 Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana 0.8094285367219299 62 GSVIVT01012117001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor PKR1, CHR4 0.8049577252720225 53 GSVIVT01016309001 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.PWR component 0.8032760876423917 54 GSVIVT01007327001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.8021614201416472 55 GSVIVT01022591001 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-III complex-specific components.TRS85 component 0.8021465257391027 56 GSVIVT01034942001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL6 0.8000250716999063 57 GSVIVT01037235001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.CHR5 component CHR5 0.7991979472911269 58 GSVIVT01012774001 Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana 0.798551516433135 59 GSVIVT01008944001 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.7985109522440117 60 GSVIVT01037231001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.7983748545933914 61 GSVIVT01022255001 0.7975204449058116 62 GSVIVT01021009001 0.7973634171395056 63 GSVIVT01011680001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component 0.7972754723448129 64 GSVIVT01025073001 0.7970844406659596 65 GSVIVT01009194001 BEACH domain-containing protein B OS=Arabidopsis thaliana 0.796403737619857 66 GSVIVT01032137001 Protein OBERON 4 OS=Arabidopsis thaliana 0.7959784772259227 67 GSVIVT01008473001 Protein modification.phosphorylation.AGC kinase superfamily.MAST kinase 0.7901386484893056 68 GSVIVT01021781001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED14 component ATMED14, MED14, SWP 0.7889045199986505 69 GSVIVT01027171001 0.7870448712232228 72 GSVIVT01012049001 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2 0.7861995335365983 71 GSVIVT01002824001 0.7854514540829731 72 GSVIVT01004707001 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein 0.7829449556404785 80 GSVIVT01002823001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.781361205860592 75 GSVIVT01020605001 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HOX-like transcription factor 0.7786914623001179 76 GSVIVT01007911001 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thaliana ESP3, EMB2733 0.778572958103163 84 GSVIVT01007703001 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana MOS1 0.7784357977713777 97 GSVIVT01023952001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.MINIYO regulator protein 0.77757726994853 79 GSVIVT01001448001 Putative disease resistance protein RGA3 OS=Solanum bulbocastanum 0.7766803159412884 80 GSVIVT01015158001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component 0.7751920301170754 87 GSVIVT01036538001 Phytohormones.auxin.transport.polar auxin transport.BIG regulator protein DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG 0.7750299588971099 83 GSVIVT01025216001 Helicase protein MOM1 OS=Arabidopsis thaliana MOM1, MOM 0.7746654863647099 84 GSVIVT01033179001 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.7746279316540596 86 GSVIVT01017643001 0.7728146240119669 88 GSVIVT01032627001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component 0.7727495745569894 89 GSVIVT01029863001 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana 0.7715666796278126 90 GSVIVT01006404001 0.7713500767945859 91 GSVIVT01002731001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.7698294671839023 92 GSVIVT01025700001 Phytohormones.ethylene.perception and signal transduction.EIN2-type signal transducer ATEIN2, PIR2, EIN2, ERA3, ORE3, CKR1, ORE2 0.7694456285405843 93 GSVIVT01000087001 DNA damage response.DNA repair polymerase activities.DNA polymerase zeta complex.REV3 catalytic subunit ATREV3, REV3 0.7691739603343557 95 GSVIVT01033178001 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.7666857051125034 97 GSVIVT01037358001 Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana 0.7653055047297354 98 GSVIVT01030942001 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG6-type DNA ligase AtLIG6, LIG6 0.7652358916750778 99 GSVIVT01019537001 0.7651297659303979 100