Sequence Description Alias PCC hrr GSVIVT01033231001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80 0.9065628101976712 3 GSVIVT01029442001 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2 0.8938074335923515 4 GSVIVT01028685001 Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana 0.8819734203436181 9 GSVIVT01026933001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP 0.8813484346516557 10 GSVIVT01036514001 0.8772900615792424 5 GSVIVT01017853001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component 0.8727274209130936 6 GSVIVT01000922001 0.8674754539855826 8 GSVIVT01033511001 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana SRCAP, PIE1, chr13 0.8644113521578074 38 GSVIVT01011514001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin SCC2, ATSCC2, EMB2773 0.8621219440560295 9 GSVIVT01027983001 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana 0.8615139634251584 10 GSVIVT01011100001 RNA biosynthesis.transcriptional activation.HUA2 transcription factor 0.8610553792752618 11 GSVIVT01021781001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED14 component ATMED14, MED14, SWP 0.8556609537897102 12 GSVIVT01016889001 0.8548030775091683 13 GSVIVT01008230001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component TAF2 0.8481092195458181 14 GSVIVT01020670001 Transcription factor GTE4 OS=Arabidopsis thaliana GTE4 0.8477279703761502 15 GSVIVT01016353001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component 0.8475327757087852 16 GSVIVT01016309001 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.PWR component 0.8441615310988794 21 GSVIVT01023517001 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor PKDM7D 0.8432940689315721 18 GSVIVT01015158001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component 0.835834912651345 23 GSVIVT01007885001 0.8337084674860413 47 GSVIVT01020162001 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component EMB2016 0.833117950993781 24 GSVIVT01000874001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.8314065240743055 22 GSVIVT01019675001 0.8262522995969871 23 GSVIVT01019761001 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor 0.8260951814167596 30 GSVIVT01018154001 MEE44 0.825735563930058 25 GSVIVT01016589001 0.819647171867329 26 GSVIVT01016716001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.SPT20/ADA5 component 0.8189055816270026 27 GSVIVT01008808001 Ubinuclein-1 OS=Arabidopsis thaliana 0.8182251207237213 28 GSVIVT01024906001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.SRm160 component 0.8151488362207113 29 GSVIVT01000835001 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.MAC7 component EMB2765 0.8141478244674857 64 GSVIVT01019359001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1) BTAF1, RGD3, CHA16, ATBTAF1, CHR16 0.8137687808795008 96 GSVIVT01009172001 Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana 0.8120204817124557 32 GSVIVT01018783001 Protein modification.phosphorylation.atypical kinase families.PIKK kinase 0.8118162951892752 49 GSVIVT01004000001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4 0.8109538247922297 34 GSVIVT01032923001 0.8108633517126812 42 GSVIVT01008802001 RNA processing.RNA decay.exosome complex.associated co-factors.SOP1 RNA degradation surveillance factor 0.8104835791522654 36 GSVIVT01003381001 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component ALA3 0.8101499570078882 49 GSVIVT01009365001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF4 component TAF4, TAF4B 0.8091671267624625 38 GSVIVT01019537001 0.808236415268978 39 GSVIVT01023952001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.MINIYO regulator protein 0.8061480445219398 40 GSVIVT01011809001 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana 0.8060051247279691 41 GSVIVT01038709001 0.8052468432037428 42 GSVIVT01008944001 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.8041379751608405 51 GSVIVT01001899001 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323 0.8037839842741914 59 GSVIVT01009833001 Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana LDL3 0.803781311946701 45 GSVIVT01009695001 0.8029654529724657 100 GSVIVT01007806001 0.7956081920262053 48 GSVIVT01022300001 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763 0.7952439629723573 97 GSVIVT01000921001 0.7946676218184804 49 GSVIVT01000338001 Amino acid metabolism.degradation.branched-chain amino acid.valine.methylmalonate-semialdehyde dehydrogenase ALDH6B2 0.7929726464987935 51 GSVIVT01011024001 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor 0.792571135479792 52 GSVIVT01011619001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2 0.79149666663071 93 GSVIVT01030107001 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana 0.7894497594275287 55 GSVIVT01003476001 C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana 0.7891607291999387 56 GSVIVT01023097001 0.7888982016328907 57 GSVIVT01018721001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.7888212545934649 61 GSVIVT01001675001 PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana 0.7886379419882567 59 GSVIVT01020543001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2 0.788461751208888 71 GSVIVT01024062001 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132 0.7884070455244987 63 GSVIVT01009834001 Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana LDL3 0.7882023295992375 62 GSVIVT01009244001 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component 0.7879083590067112 63 GSVIVT01003951001 Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana ALDH6B2 0.7864493222496786 64 GSVIVT01035021001 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP4 phosphatase complex.regulatory component (PSY2L) 0.7838840279689541 66 GSVIVT01018052001 Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana 0.7833879258388415 67 GSVIVT01009173001 Protein degradation.peptidase families.cysteine-type peptidase activities.SUMO-specific protease families.ULP2 protease 0.7822953448412217 69 GSVIVT01034370001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Ris1 chromatin remodeling factor 0.7803955928471933 70 GSVIVT01010842001 Flowering time control protein FPA OS=Arabidopsis thaliana FPA 0.779693939279518 71 GSVIVT01028117001 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii 0.7795877097372853 72 GSVIVT01037437001 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase 0.7776380768562979 80 GSVIVT01026409001 0.7752095420399705 76 GSVIVT01031321001 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana 0.7747145055096293 77 GSVIVT01032657001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor 0.7734094447069663 78 GSVIVT01000025001 L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana 0.7733717602099387 79 GSVIVT01000087001 DNA damage response.DNA repair polymerase activities.DNA polymerase zeta complex.REV3 catalytic subunit ATREV3, REV3 0.7732777345722635 80 GSVIVT01031557001 Pumilio homolog 5 OS=Arabidopsis thaliana APUM6, PUM6 0.7710539342066183 81 GSVIVT01038350001 ROS3 0.7710458767644591 82 GSVIVT01021322001 Transcription factor GTE9 OS=Arabidopsis thaliana 0.770994322211183 83 GSVIVT01022608001 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.7682257048749618 85 GSVIVT01035877001 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS6 0.7676853093778244 86 GSVIVT01036518001 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) 0.7663777140687882 87 GSVIVT01037689001 0.7656742202625453 88 GSVIVT01033783001 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component 0.765600669221678 89 GSVIVT01028706001 0.764325869407294 92 GSVIVT01011650001 RNA biosynthesis.transcriptional activation.ARR-B transcription factor ARR1, RR1 0.7633955280131602 96 GSVIVT01009040001 Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana ATMBD8, MBD8 0.7630639721133454 97 GSVIVT01008473001 Protein modification.phosphorylation.AGC kinase superfamily.MAST kinase 0.7629267030076835 98 GSVIVT01013053001 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor bZIP16, AtbZIP16 0.7623441133845384 99 GSVIVT01035354001 0.7621550829012826 100