Sequence Description Alias PCC hrr GSVIVT01017770001 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor ATALY3, ALY3 0.8794516629170704 1 GSVIVT01005970001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component 0.872889058540734 13 GSVIVT01023393001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad54-like group.ATRX chromatin remodeling factor CHR20, ATRX 0.871212655963011 19 GSVIVT01019950001 emb1579 0.8646672046135333 11 GSVIVT01017346001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14 0.8622495215199182 63 GSVIVT01035901001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor PKL, GYM, CHR6, SSL2, CHD3 0.8620409532177197 59 GSVIVT01017686001 0.8523779549347577 26 GSVIVT01022440001 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.8523279965355175 59 GSVIVT01036698001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.8520994829587246 41 GSVIVT01028893001 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.MTB component EMB1691 0.851477957959633 25 GSVIVT01010209001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein ATPRP40C, PRP40C 0.8512774436052443 42 GSVIVT01026206001 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component 0.8488041370396171 26 GSVIVT01005044001 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana TPR16 0.8480367067637021 13 GSVIVT01000253001 Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.HDC1/Rxt3 associated component 0.84746094422877 18 GSVIVT01021523001 KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.8446789202683632 37 GSVIVT01009302001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40A pre-mRNA-processing protein ATPRP40A, PRP40A 0.8439066118251047 16 GSVIVT01033327001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 NRPA1 0.842158185839484 53 GSVIVT01037513001 Protein modification.phosphorylation.TSL/TOUSLED kinase TSL 0.8396588300168608 41 GSVIVT01010035001 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor ACCD 0.8393508961461164 31 GSVIVT01030649001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG2, ATXR3 0.8385904799659581 41 GSVIVT01035648001 0.8382877608543352 66 GSVIVT01024809001 RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component 0.8379049849621285 63 GSVIVT01035014001 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii 0.8377915364887292 24 GSVIVT01038625001 0.8375358513805089 24 GSVIVT01008114001 Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana 0.8369095604123609 61 GSVIVT01017791001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Iswi chromatin remodeling factor CHR17 0.8360673793679748 26 GSVIVT01001079001 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class I ARF-GAP protein VAN3, SFC, AGD3 0.8333336464952104 53 GSVIVT01034254001 0.8321588930216847 34 GSVIVT01016344001 Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.8303599082782572 32 GSVIVT01024440001 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPL, WSIP1 0.8289942864140185 38 GSVIVT01025503001 Protein modification.N-linked glycosylation.complex N-glycan maturation.class-II glucosidase II complex.subunit beta PSL4 0.828527614956626 31 GSVIVT01008805001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class II/ASH1 histone methyltransferase component LAZ2, CCR1, ASHH2, EFS, SDG8 0.8209408549536694 33 GSVIVT01007845001 0.8205250753489923 34 GSVIVT01035591001 EMB1611, MEE22 0.819124254880764 37 GSVIVT01023504001 Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana 0.8144221826376283 71 GSVIVT01026774001 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2B eIF2-GDP recycling complex.eIF2B-epsilon 0.8126046380601055 58 GSVIVT01016204001 Protein RNA-directed DNA methylation 3 OS=Arabidopsis thaliana 0.8122371158332304 40 GSVIVT01007917001 0.8091541055491007 61 GSVIVT01020232001 Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana ATMBD9, MBD9 0.8075621381233363 82 GSVIVT01027871001 Splicing factor U2af large subunit A OS=Arabidopsis thaliana 0.8071948564080154 83 GSVIVT01035326001 0.8061724991554674 47 GSVIVT01035878001 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.8057346866241321 48 GSVIVT01019046001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component 0.803994250182653 53 GSVIVT01031636001 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase TOP3b 0.8034022316928305 54 GSVIVT01035494001 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease ATDCL3, DCL3 0.8033130930967597 55 GSVIVT01017738001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.CUL1/CUL2 scaffold component AXR6, ATCUL1, CUL1 0.802578533602938 88 GSVIVT01010343001 Cell division control protein 48 homolog C OS=Arabidopsis thaliana emb1354, CDC48C 0.801822277476514 58 GSVIVT01025385001 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase 0.8008031370436643 59 GSVIVT01035963001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic subunits.subunit 2 DRD2, NRPE2, NRPD2A, NRPD2, DMS2 0.7991391277907858 62 GSVIVT01025725001 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor TKI1 0.7959724377441344 66 GSVIVT01018223001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase RDO4, HUB1 0.7958994591971523 73 GSVIVT01030444001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5-like chromatin remodeling factor 0.7938881776983399 74 GSVIVT01008258001 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.CASP-type golgin CASP, AtCASP 0.7929003355782639 80 GSVIVT01000245001 Chromatin organisation.DNA methylation.non-canonical RNA-directed DNA methylation.SGS3 stabilization factor ATSGS3, SGS3 0.7924098506083297 78 GSVIVT01034052001 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst DEI1, PAS1 0.7923660130996869 97 GSVIVT01010769001 DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana emb1507 0.7922563167998048 80 GSVIVT01005913001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component SUVH5, SGD9 0.7909868543892254 81 GSVIVT01035592001 EMB1611, MEE22 0.789105486504798 83 GSVIVT01031306001 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16 0.7888851982553488 84 GSVIVT01014783001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS 0.7866275625173268 89 GSVIVT01036918001 Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana 0.7861700199581118 90 GSVIVT01006448001 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase ATCPL1, CPL1, FRY2 0.7844233022877034 93 GSVIVT01037455001 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS3 0.7835725799720772 95 GSVIVT01010197001 0.7833849902389911 96 GSVIVT01011972001 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear lamina.CRWN lamin-like protein LINC3 0.7832064868922546 97 GSVIVT01017821001 0.783119196858044 98 GSVIVT01021547001 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana 0.7827557020378266 99