Sequence Description Alias PCC hrr GSVIVT01001899001 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323 0.861163073538942 6 GSVIVT01033231001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80 0.8569940456063287 26 GSVIVT01019359001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1) BTAF1, RGD3, CHA16, ATBTAF1, CHR16 0.856889090000155 21 GSVIVT01033327001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 NRPA1 0.8536211616236034 40 GSVIVT01003381001 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component ALA3 0.8498557634583795 14 GSVIVT01024708001 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain 0.8443319661089014 22 GSVIVT01007885001 0.843588359380706 34 GSVIVT01011619001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2 0.8434929273994904 32 GSVIVT01016344001 Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.8404462831674493 26 GSVIVT01000234001 Solute transport.primary active transport.P-type ATPase superfamily.P5 family.MIA P5-type cation-transporting ATPase PDR2, MIA 0.8374018413024921 14 GSVIVT01034015001 RNA processing.RNA 5-end cap adding.mRNA capping enzyme 0.8373841565189867 19 GSVIVT01030649001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG2, ATXR3 0.8371490749085566 43 GSVIVT01003920001 Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana ATLCBK1, LCBK1 0.8351930697108154 13 GSVIVT01000835001 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.MAC7 component EMB2765 0.8309338740571071 40 GSVIVT01005813001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.ELYS scaffold nucleoporin HOS1 0.8306789658704682 49 GSVIVT01036698001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.8285125147732243 72 GSVIVT01025470001 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease EMB80, EMB1275, DEK1, ATDEK1 0.8268298291352132 95 GSVIVT01010035001 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor ACCD 0.8237196200543281 54 GSVIVT01013627001 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component 0.8237069426924182 36 GSVIVT01031879001 Protein modification.phosphorylation.atypical kinase families.PIKK kinase TOR 0.81914019737529 70 GSVIVT01035878001 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.8185877320995922 24 GSVIVT01010735001 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase 0.8184191290139174 23 GSVIVT01018223001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase RDO4, HUB1 0.8155207718338842 35 GSVIVT01035813001 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 0.8149889817006915 24 GSVIVT01008079001 0.8130621985501085 26 GSVIVT01016885001 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B-type regulatory component ATB BETA 0.8128039368213335 27 GSVIVT01020162001 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component EMB2016 0.8121276908947644 47 GSVIVT01023854001 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor 0.811914076655723 29 GSVIVT01037972001 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS54 GARP-specific component ATVPS54, VPS54 0.8098777650218796 30 GSVIVT01019046001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component 0.8087057356575533 35 GSVIVT01022300001 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763 0.8086805781730381 64 GSVIVT01013247001 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).UPF1 effector protein UPF1, ATUPF1, LBA1 0.8085601172656726 33 GSVIVT01006448001 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase ATCPL1, CPL1, FRY2 0.8076460683320292 34 GSVIVT01031411001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.8049116133052983 40 GSVIVT01022591001 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-III complex-specific components.TRS85 component 0.8048680286229766 48 GSVIVT01010343001 Cell division control protein 48 homolog C OS=Arabidopsis thaliana emb1354, CDC48C 0.8044990227529468 38 GSVIVT01033382001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component 0.8025958834401358 41 GSVIVT01012532001 Cell cycle.organelle machineries.organelle fission.mitochondrion and peroxisome division.DRP3 dynamin-like protein DRP3A, ADL2 0.8025095039257871 48 GSVIVT01018154001 MEE44 0.8022315388690863 43 GSVIVT01009302001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40A pre-mRNA-processing protein ATPRP40A, PRP40A 0.8016366372290761 61 GSVIVT01008473001 Protein modification.phosphorylation.AGC kinase superfamily.MAST kinase 0.8001196319014958 45 GSVIVT01026952001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor CHA2, CHR2, BRM, ATBRM 0.8000104098505666 78 GSVIVT01016742001 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO3/XPOT export karyopherin PSD 0.7995183062346438 47 GSVIVT01032627001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component 0.7975160981276425 50 GSVIVT01034603001 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP12 0.7973733404686336 63 GSVIVT01028685001 Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana 0.7961476495372718 78 GSVIVT01033178001 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.7947827893350606 53 GSVIVT01026933001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP 0.794673067967841 92 GSVIVT01012004001 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase TADA, ATTADA 0.7930227204032501 61 GSVIVT01012038001 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana 0.7917150486363789 59 GSVIVT01004707001 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein 0.7904454803663586 68 GSVIVT01038520001 0.788673888896677 80 GSVIVT01023517001 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor PKDM7D 0.7884286160452723 64 GSVIVT01034169001 Protein degradation.N-end rule pathway of targeted proteolysis.N-recognin-mediated ubiquitination.type-I-residues E3 ubiquitin ligase (PRT6) PRT6 0.7880655946430135 81 GSVIVT01021865001 RNA processing.RNA decay.deadenylation-dependent mechanism.XRN4 exoribonuclease EIN5, AIN1, XRN4, ATXRN4 0.7879618156270876 67 GSVIVT01003914001 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component 0.7871122478456047 68 GSVIVT01022139001 0.7870353330467831 69 GSVIVT01037437001 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase 0.7860664895733364 71 GSVIVT01033442001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.CCR4 deadenylase component 0.7860243440563414 72 GSVIVT01016309001 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.PWR component 0.7852248863504787 73 GSVIVT01012117001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor PKR1, CHR4 0.7850890514857816 74 GSVIVT01016585001 0.7843628765426203 75 GSVIVT01009206001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL2 0.7840028951525356 77 GSVIVT01001441001 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec31 scaffolding component 0.7827430344143869 79 GSVIVT01025073001 0.7816670241190607 80 GSVIVT01018721001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.78110985405953 81 GSVIVT01005044001 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana TPR16 0.7809794747979824 82 GSVIVT01037455001 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS3 0.7803928786601821 83 GSVIVT01013767001 Vesicle trafficking.endomembrane trafficking.PI3-kinase vesicle nucleation complex I/II.VPS34/PI3K phosphatidylinositol 3-kinase component ATVPS34, PI3K, VPS34 0.7802503879102606 84 GSVIVT01002593001 0.7780000622118984 87 GSVIVT01008805001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class II/ASH1 histone methyltransferase component LAZ2, CCR1, ASHH2, EFS, SDG8 0.7772367142794132 89 GSVIVT01009834001 Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana LDL3 0.772759649134235 96 GSVIVT01014783001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS 0.7725395533131578 98 GSVIVT01016889001 0.7715816215503347 100