Sequence Description Alias PCC hrr GSVIVT01009302001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40A pre-mRNA-processing protein ATPRP40A, PRP40A 0.8733899337277737 5 GSVIVT01036698001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.8725038780919205 18 GSVIVT01035985001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SR140 snRNP-associated protein 0.8642769522898479 3 GSVIVT01010035001 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor ACCD 0.8605281156838416 11 GSVIVT01033327001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 NRPA1 0.8598498714194814 32 GSVIVT01018223001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase RDO4, HUB1 0.8503370538012872 8 GSVIVT01035813001 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 0.8425839728009863 7 GSVIVT01010209001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein ATPRP40C, PRP40C 0.8375666701471955 76 GSVIVT01009695001 0.8364917927534122 41 GSVIVT01014219001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.8360673793679748 26 GSVIVT01031192001 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component ATTIF3A1, ATEIF3A-1, EIF3A-1, TIF3A1, EIF3A 0.8334065328870063 12 GSVIVT01030782001 DNA damage response.DNA repair mechanisms.nucleotide excision repair (NER).DNA repair protein (RAD4) RAD4, ATRAD4 0.8299369567921498 12 GSVIVT01019046001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component 0.8295179380554869 17 GSVIVT01000245001 Chromatin organisation.DNA methylation.non-canonical RNA-directed DNA methylation.SGS3 stabilization factor ATSGS3, SGS3 0.8286962030965431 14 GSVIVT01008079001 0.8265682219948549 15 GSVIVT01005970001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component 0.8251042391585118 76 GSVIVT01011619001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2 0.8221662828211272 55 GSVIVT01022300001 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763 0.8198544478912142 42 GSVIVT01011972001 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear lamina.CRWN lamin-like protein LINC3 0.8191338548572135 23 GSVIVT01034941001 emb1441 0.8164876953814213 20 GSVIVT01005913001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component SUVH5, SGD9 0.8160280017468015 21 GSVIVT01012004001 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase TADA, ATTADA 0.8110819570252011 30 GSVIVT01031411001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.8106419717845433 30 GSVIVT01017770001 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor ATALY3, ALY3 0.8105545303012262 74 GSVIVT01016344001 Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.8103019819003996 67 GSVIVT01025503001 Protein modification.N-linked glycosylation.complex N-glycan maturation.class-II glucosidase II complex.subunit beta PSL4 0.8081853591411396 27 GSVIVT01010632001 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase VALRS, TWN2 0.807165821568256 77 GSVIVT01023097001 0.8060949779197658 29 GSVIVT01033430001 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.RRP5 assembly factor 0.8058713534335457 57 GSVIVT01014783001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS 0.805644257372282 39 GSVIVT01038625001 0.8053829702590881 95 GSVIVT01000253001 Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.HDC1/Rxt3 associated component 0.8052466124542039 87 GSVIVT01019950001 emb1579 0.8042858406260214 61 GSVIVT01010750001 ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana 0.8038570324419271 54 GSVIVT01034015001 RNA processing.RNA 5-end cap adding.mRNA capping enzyme 0.8030937861286341 77 GSVIVT01012163001 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.7999868806904001 38 GSVIVT01028743001 0.7963182354017443 41 GSVIVT01009356001 0.795717538976422 42 GSVIVT01010206001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF15 component TAF15 0.7940541989648743 43 GSVIVT01009206001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL2 0.793972684360158 54 GSVIVT01038711001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A3 component ATO 0.791117644421339 46 GSVIVT01014233001 Transcription factor GTE4 OS=Arabidopsis thaliana GTE4 0.7895723253789599 47 GSVIVT01007327001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.7893122178325225 63 GSVIVT01009684001 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN4 component FUS8, EMB134, CSN4, COP8, COP14, ATS4, FUS4 0.7887949656465347 69 GSVIVT01016353001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component 0.7885740467818636 81 GSVIVT01035963001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic subunits.subunit 2 DRD2, NRPE2, NRPD2A, NRPD2, DMS2 0.7883912030233413 52 GSVIVT01022281001 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.7876034742348311 55 GSVIVT01002824001 0.7875149083985306 56 GSVIVT01001899001 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323 0.787460359519089 96 GSVIVT01007689001 Cell division cycle protein 48 homolog OS=Glycine max 0.7863034859186282 60 GSVIVT01037437001 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase 0.7858348582847519 68 GSVIVT01016204001 Protein RNA-directed DNA methylation 3 OS=Arabidopsis thaliana 0.7851353954498435 77 GSVIVT01034603001 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP12 0.7848987819094132 77 GSVIVT01035592001 EMB1611, MEE22 0.7845277999784988 65 GSVIVT01020281001 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst CYP59, ATCYP59 0.7840010396434806 66 GSVIVT01017821001 0.7824032103905861 69 GSVIVT01033382001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component 0.7810809528083562 72 GSVIVT01024062001 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132 0.7800304575595635 74 GSVIVT01010343001 Cell division control protein 48 homolog C OS=Arabidopsis thaliana emb1354, CDC48C 0.7798268293275045 75 GSVIVT01021009001 0.7792876031514445 76 GSVIVT01021121001 0.7789559901519915 77 GSVIVT01029180001 0.7771012916278714 80 GSVIVT01017554001 0.7770745123710584 81 GSVIVT01021122001 0.7760268293240069 82 GSVIVT01000649001 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC6-type golgin GC6, MAG4 0.7752055856977641 84 GSVIVT01011020001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC3 component SCC3, ATSCC3 0.7750301919047613 85 GSVIVT01007428001 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear lamina.CRWN lamin-like protein LINC4 0.7736593224953385 87 GSVIVT01035595001 0.7725250601376191 88 GSVIVT01019063001 0.7715130869307478 89 GSVIVT01032455001 Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.7710434190447671 90 GSVIVT01023587001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.7706773967838076 92 GSVIVT01029863001 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana 0.7682827464752331 95 GSVIVT01017379001 DNA damage response.DNA repair mechanisms.base excision repair (BER).formamidopyrimidine-DNA glycosylase (FPG1) FPG-2, ATMMH-2, MMH-1, MMH-2, ATMMH-1, FPG-1, ATFPG-1, ATFPG-2 0.768104188173339 98 GSVIVT01024225001 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.DNA methylation accessory complex (DDR).DRD1 component DMS1, DRD1, CHR35 0.7679989926492271 100