Sequence Description Alias PCC hrr Smo98006 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ligase complexes.CUL3 scaffold component ATCUL3A, ATCUL3, CUL3A, CUL3 0.9415736325969585 2 Smo440052 0.9391704909967981 10 Smo438861 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component 0.9310480643422999 11 Smo441325 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.ZC11A component 0.9281303405799677 6 Smo161477 Transcriptional repressor ILP1 OS=Arabidopsis thaliana ILP1 0.92605208897326 8 Smo441953 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP 0.9256558429728388 26 Smo407186 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.924978432731468 7 Smo410730 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.920785894771996 23 Smo88215 Protein modification.phosphorylation.atypical kinase families.PIKK kinase TOR 0.9200718494321983 21 Smo438226 0.9175350251198665 10 Smo173767 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.917414766020012 47 Smo182327 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component 0.9163498507488772 54 Smo2133 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease 0.9143917574317308 13 Smo441216 Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA1 component ATRPA70A, RPA1A, ATRPA1A, RPA70A 0.9115317542999323 25 Smo446036 0.9081763404360452 15 Smo443962 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL6 0.907816929332109 66 Smo440912 0.9071360254685923 26 Smo413864 0.9069111014669355 33 Smo30444 0.905971813658621 19 Smo175932 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PPKL phosphatase BSL3 0.9059238946012967 49 Smo70578 0.9055899585178107 83 Smo60241 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor 0.9050691192867761 35 Smo235886 RNA biosynthesis.RNA polymerase II-dependent transcription.ELONGATOR transcription elongation complex.ELP1 component ABO1, ELO2 0.9049581495772745 23 Smo235391 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease EMB80, EMB1275, DEK1, ATDEK1 0.9042490291488362 24 Smo74297 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM732 component 0.9037768923987543 25 Smo122175 Solute transport.primary active transport.P-type ATPase superfamily.P2 family.ECA P2A-type calcium cation-transporting ATPase ECA3, ATECA3 0.9034308489870275 26 Smo90432 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase 0.9003788680286641 28 Smo440969 0.8992335858688962 40 Smo406538 Transportin MOS14 OS=Arabidopsis thaliana 0.8990082930068312 31 Smo410159 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).SMG7 protein SMG7 0.8982601408976019 51 Smo439915 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPR1 0.8971230520368815 32 Smo1983 Pumilio homolog 1 OS=Arabidopsis thaliana APUM4, PUM4 0.8952879656703677 34 Smo163891 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPR1 0.8950567990146014 35 Smo50132 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana HVT1, ATVT-1 0.894206634463997 39 Smo440558 Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana PKL, GYM, CHR6, SSL2, CHD3 0.893820723444455 37 Smo438753 0.8909827794855247 40 Smo443682 Uncharacterized protein At4g19900 OS=Arabidopsis thaliana 0.8904238867505779 49 Smo79692 Protein RMD5 homolog OS=Arabidopsis thaliana 0.8904126079779165 42 Smo186944 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1) BTAF1, RGD3, CHA16, ATBTAF1, CHR16 0.8899540020203387 63 Smo232603 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component 0.8897807108615581 44 Smo168303 Acylamino-acid-releasing enzyme 1 OS=Oryza sativa subsp. japonica 0.8893986742726215 61 Smo413471 0.8884902077281304 47 Smo144158 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507 0.8873002356878409 53 Smo419083 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor 0.8862046702195566 50 Smo78344 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Prp17 component 0.8860781591581991 50 Smo173603 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14 0.8852136281209438 99 Smo107792 0.884845332342597 53 Smo97324 Phosphatidylinositol 4-kinase beta 1 OS=Arabidopsis thaliana PI4KBETA1, PI-4KBETA1 0.8839806522767314 80 Smo171199 Multi-process regulation.TOR signalling pathway.TORC complex.RAPTOR regulatory component RAPTOR1, ATRAPTOR1B, RAPTOR1B 0.8839504342982496 95 Smo98098 Redox homeostasis.low-molecular-weight scavengers.glutathione metabolism.glutathione degradation.oxoprolinase OXP1 0.8829816873434241 57 Smo442720 0.8824611284832772 58 Smo439184 0.8823381599773924 59 Smo143427 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor 0.8821534303964124 61 Smo407447 Nutrient uptake.copper uptake.reduction-based uptake.COPT Cu(+) transporter COPT5 0.8819893718194531 89 Smo410765 0.8814377816447673 63 Smo90560 DNA damage response.DNA repair polymerase activities.DNA polymerase eta (POLH) POLH 0.8809383757098854 65 Smo146155 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL3, KAK 0.8804657867618609 76 Smo101375 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.8786955981420648 67 Smo444069 0.8782114075337153 68 Smo437662 0.8775791405780039 69 Smo236021 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease EMB80, EMB1275, DEK1, ATDEK1 0.8773442189681349 70 Smo81360 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor MYB4R1, AtMYB4R1 0.8771320768410362 71 Smo170207 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16 0.8766275165929626 73 Smo443317 Disease resistance response protein 206 OS=Pisum sativum 0.8759604573341214 74 Smo141341 Phytohormones.auxin.transport.polar auxin transport.BIG regulator protein DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG 0.8759294524679506 75 Smo422169 RNA biosynthesis.transcriptional activation.bHLH transcription factor AIB, ATAIB 0.8757599807317794 76 Smo100054 RNA processing.RNA modification.uridylation.URT1 uridylyltransferase 0.8753727330269412 78 Smo156885 Phytohormones.abscisic acid.perception and signalling.signal transducer (KEG) KEG 0.8746061146919158 80 Smo93518 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO E3 ligase activities.SUMO E3 ligase (SIZ1) 0.8735953678406737 95 Smo61965 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP9 0.8727336864931988 89 Smo52357 Protein GFS12 OS=Arabidopsis thaliana 0.8724573163540633 85 Smo172575 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH4/11 component ftsh4 0.8704423738802153 86 Smo403203 ATDJC39, ARL2 0.8694664237557269 90 Smo174168 Solute transport.carrier-mediated transport.DMT superfamily.UmamiT-type solute transporter WAT1 0.868853271710006 91 Smo411870 Polyadenylate-binding protein-interacting protein 4 OS=Arabidopsis thaliana CID4 0.8674170078022976 93 Smo428704 0.8672825247562986 95 Smo24258 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase 0.8661016210330726 96 Smo13258 Multi-process regulation.Rop GTPase regulatory system.RopGAP GTPase-activating protein 0.8660691075357688 97 Smo442780 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein 0.8654253869315607 100