Sequence Description Alias PCC hrr Smo102611 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease 0.9789689129032323 2 Smo443419 0.9735695105474744 3 Smo84784 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1 0.9668601542924725 3 Smo439181 0.962066526467445 4 Smo418465 0.9605840832105058 5 Smo425390 0.9557965773200571 6 Smo445274 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst FKBP62, ROF1, ATFKBP62 0.9554890847485868 7 Smo447716 0.9547211165061885 8 Smo270688 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.9530656166801159 9 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.9505564210093733 10 Smo141109 0.9387770532374597 11 Smo170457 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 134.6) 0.9346489063302403 12 Smo168153 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CPN60B, LEN1 0.9333418454019607 13 Smo128787 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NYC1 component NYC1 0.9281317636043377 14 Smo442726 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) 0.9277164537039356 15 Smo12282 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.9273317522119645 16 Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.9263193751931114 17 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.9260527988217363 18 Smo105805 Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana 0.9192533712713803 19 Smo77583 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.MSH1 factor CHM, MSH1, ATMSH1, CHM1 0.918628152788763 20 Smo418636 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC13 component 0.9176091648917407 21 Smo406591 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor 0.9148445900199309 22 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.9145476661668223 23 Smo442872 0.9140938448933116 24 Smo143057 0.9132068199960192 25 Smo167572 Nutrient uptake.sulfur assimilation.sulfate assimilation.(P)APS reductase ATAPR3, PRH26, PRH-26, APR3 0.9109132887116044 26 Smo438182 0.9102175215801718 27 Smo430784 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.9097463949592808 28 Smo423505 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor 0.9071855143281334 29 Smo77541 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana 0.9069995022289377 30 Smo10677 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138 0.906579340748668 31 Smo430412 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.9061246230318 32 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.9046437031658846 33 Smo405512 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component 0.9023313209115099 34 Smo84597 0.90122149775403 35 Smo439153 0.8989469361356314 36 Smo128521 Photosynthesis.photophosphorylation.ATP synthase complex.assembly.CGL160 factor 0.8977604389510049 37 Smo96554 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.CTP synthetase emb2742 0.8956784522198539 38 Smo416844 0.8952379804948424 39 Smo88538 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88 0.8941537447654362 40 Smo438805 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312 0.8934828251882624 41 Smo419739 0.8920158312361524 42 Smo444786 0.8909074482583427 43 Smo447679 Leucine-rich repeat-containing protein ODA7 OS=Chlamydomonas reinhardtii 0.8891118778145046 44 Smo81522 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component FTSH12, EMB36, EMB156, EMB1047 0.8889677129407856 45 Smo403442 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana 0.8884132774983725 46 Smo150329 Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana AIR3 0.8874551199179681 47 Smo405784 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B GYRB2 0.8874204931385096 48 Smo413357 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana 0.885747068468076 49 Smo170091 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2 0.8844222007862913 50 Smo93752 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1 0.8814885664322502 51 Smo271353 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase QPT 0.8807514484239657 52 Smo442094 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component 0.8806653181736896 53 Smo84550 SH2 domain-containing protein A OS=Arabidopsis thaliana STATLA, ATSHA, SHA 0.8803550130970466 54 Smo78010 Protein modification.protein folding and quality control.protein folding catalyst activities.TF nascent polypeptide chaperone 0.8788077333904087 55 Smo12954 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 0.8771967720788858 56 Smo410507 0.8767625572109772 57 Smo405767 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana FTSH12, EMB36, EMB156, EMB1047 0.8752616310790047 58 Smo73985 RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana 0.8752157744358021 59 Smo78627 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG25, ATXR7 0.8748849019211314 60 Smo99603 DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica emb1138 0.8748090232492558 61 Smo442385 Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana 0.8741199163600875 62 Smo141010 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor COL3, ATCOL3 0.8695896438082525 63 Smo402209 0.8680058650508555 64 Smo84658 Chromatin organisation.histone modifications.histone acetylation.MYST-type histone acetyltransferase HAM1 0.8675566401716053 65 Smo439207 Protein degradation.peptidase families.cysteine-type peptidase activities.papain-type protease 0.867195490643269 66 Smo184206 Carbohydrate metabolism.starch metabolism.degradation.maltose metabolism.cytosolic alpha-glucan phosphorylase 0.8671796331953672 67 Smo73844 0.864704458150337 68 Smo404930 0.8641350558967248 69 Smo154280 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1 0.862903960509554 89 Smo177598 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) 0.8626140662809151 71 Smo58058 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 0.8622229804945366 72 Smo438647 Multi-process regulation.circadian clock.TOC1 evening oscillator component APRR1, AtTOC1, TOC1, PRR1 0.8609579466968469 73 Smo180460 Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana 0.8593549363785334 74 Smo403724 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.8588579754942499 75 Smo164116 0.856699516668414 76 Smo152730 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY 0.8539977747981937 77 Smo80721 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.8517534601038687 79 Smo85224 0.8517390069124642 80 Smo98813 0.8510772184844758 81 Smo101296 Solute transport.carrier-mediated transport.MFS superfamily.NTT ATP:ADP antiporter NTT1, ATNTT1 0.84970522693736 82 Smo80789 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 158.0) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8476522597979972 83 Smo103638 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana 0.8467833994078677 84 Smo61778 0.8464031876512587 86 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.845264071157402 95 Smo271998 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.844782863631476 88 Smo42040 Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum 0.8441933576387936 89 Smo410377 0.8440308578013849 91 Smo410009 0.8430520363692379 92 Smo442087 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor 0.84290135471307 93 Smo47998 Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana 0.8428264023101919 94 Smo103517 Phytohormones.gibberellin.synthesis.ent-kaurene oxidase KAO2, ATKAO2, CYP88A4 0.8415893611579485 95 Smo146755 0.838186854140154 97 Smo424841 0.8381741020668536 98 Smo163827 Beta-glucosidase 25 OS=Oryza sativa subsp. japonica BGLU40 0.8359843502369513 100