Sequence Description Alias PCC hrr Smo448328 Photosynthesis.photophosphorylation.pseudo-cyclic electron flow.flavodiiron protein 0.9540581634205516 4 Smo271018 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1 0.9419721814663812 2 Smo423707 0.9349788459471204 18 Smo74261 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum PDS3, PDS, PDE226 0.9290531870937839 8 Smo63559 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana 0.9287207509993713 5 Smo271457 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB 0.9278940813399118 9 Smo91144 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101 0.9266366173481176 19 Smo51301 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA3, KEA3 0.9255614034285397 10 Smo417198 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.CIN phosphatase PGLP1, ATPGLP1 0.9237068566869999 9 Smo166238 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3 0.9228530138725906 15 Smo182694 Photosynthesis.calvin cycle.phosphoribulokinase PRK 0.9225459019370721 12 Smo426174 0.9218875023865981 12 Smo90536 Protein modification.S-glutathionylation and deglutathionylation.glutathione S-transferase activities.class lambda 0.9203329636665273 13 Smo232430 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226 0.9201103958908908 14 Smo413766 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.bifunctional methylthioribulose-1-phosphate dehydratase and enolase-phosphatase 0.9161496021826693 15 Smo437225 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.9161121802764689 18 Smo107842 Probable GTP-binding protein OBGC1, chloroplastic OS=Oryza sativa subsp. indica CPSAR1, EMB269, ATOBGC 0.9156376853278686 17 Smo103361 0.9152287263782088 18 Smo79954 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).SOQ1 negative NPQ-regulator protein 0.9149471146708864 19 Smo148692 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor FUG1 0.9126391616510293 20 Smo155359 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS 0.9119285245230214 21 Smo440582 ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana SRS2, ATSRS2 0.9076716649078956 22 Smo55147 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase 0.9075268853383293 23 Smo228849 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.9048161986925637 24 Smo14478 0.9042996096030144 25 Smo417577 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase G6PD2 0.9030925046327015 26 Smo97487 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor(50.1.3 : 302.1) & Isoflavone reductase homolog IRL1 OS=Ginkgo biloba 0.8981406834841867 27 Smo176144 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP1, Deg1 0.8972451481284994 28 Smo143134 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component 0.8958395094368895 33 Smo165421 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase 0.8947673319849078 30 Smo82002 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor CRM3, HCF152 0.8941510993830689 31 Smo423983 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4 0.8930928457684856 32 Smo177176 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana 0.8928388827369322 33 Smo413416 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL 0.8922693138030194 34 Smo119009 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase SYCO ARATH 0.8917248174530551 37 Smo233481 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor ATRAB8D, ATRABE1B, RABE1b 0.8909381806684121 36 Smo117159 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1 0.8907541901330506 37 Smo117112 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor APE1 0.889580079153875 38 Smo73285 0.889036465800938 39 Smo52887 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component 0.8880968866888879 40 Smo93539 Solute transport.carrier-mediated transport.APC superfamily.NCS-1 family.nucleobase cation transporter (PLUTO-type) 0.8877655465372205 41 Smo270508 0.8876102957175386 42 Smo64169 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component 0.8869750012839092 43 Smo160384 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.8864733406002021 44 Smo268187 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.DXS 1-deoxy-D-xylulose 5-phosphate synthase CLA, DXS, CLA1, DEF, DXPS2 0.8852815652668496 45 Smo438810 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.OTP51 splicing factor 0.8839509538742828 46 Smo403333 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana LHCA5 0.8829581315737514 47 Smo448162 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana 0.8824524763543858 49 Smo405876 0.8809443972417299 49 Smo93150 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.8785716064340687 50 Smo170624 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132 0.8781793499828874 51 Smo445517 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2 0.8776921975041485 52 Smo64109 0.8776690190857191 53 Smo92189 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase 0.877544760699839 54 Smo79425 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase 0.8773162745027135 59 Smo136561 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana 0.8768192070809183 56 Smo93338 Solute transport.carrier-mediated transport.APC superfamily.HAAAP-type aromatic amino acid transporter 0.8762247062389844 57 Smo227735 Redox homeostasis.enzymatic reactive oxygen species scavengers.superoxide dismutase activities.copper/zinc superoxide dismutase CZSOD2, CSD2 0.8761015697545729 58 Smo235693 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.8751334902962902 75 Smo169254 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1 0.8750643729472061 60 Smo443338 0.8748269022262547 61 Smo268427 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase 0.8744289159282337 62 Smo442013 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana 0.8742426196503927 63 Smo130316 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52 0.8733617823095084 64 Smo439518 Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana 0.8732309368863135 65 Smo411148 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.8724766989588181 66 Smo174616 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component V157, PDE166, ALB1, CHLD, ALB-1V 0.8708615614094217 67 Smo404832 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component PTAC5 0.8707289134214741 68 Smo418548 Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 OS=Arabidopsis thaliana 0.8706023422681132 69 Smo63596 Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana 0.8702985323989049 70 Smo64370 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor 0.8692907150966451 71 Smo145591 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RNC1 ribonuclease 0.8687599962808493 72 Smo82221 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana 0.8685139944840269 73 Smo107618 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.868330501171187 74 Smo183274 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.8676813454887021 75 Smo429956 0.8672653879890897 76 Smo33324 Solute transport.carrier-mediated transport.MFS superfamily.NGT N-acetylglucosamine transporter 0.867188242911123 77 Smo417692 0.8667257892806529 78 Smo227615 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.8662727590858165 79 Smo131328 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1 0.865636999190928 80 Smo81134 0.8653810136365041 81 Smo141857 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor APG3 0.8645633425023064 82 Smo98955 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana CRR22 0.8639296456681094 83 Smo234630 Probable amidase At4g34880 OS=Arabidopsis thaliana 0.8634042473413907 84 Smo116848 Protein biosynthesis.aminoacyl-tRNA synthetase activities.alanine-tRNA ligase 0.8633245836103877 85 Smo139232 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.lysine N-methyltransferase 0.8628378758472705 86 Smo440512 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamyl-tRNA-dependent amidotransferase complex.GatA component 0.8627348413677224 87 Smo438881 Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana 0.8627113734975037 88 Smo136782 0.8609352845322292 89 Smo25109 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase 0.8606242123554307 90 Smo115078 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1 0.8605864191006771 91 Smo77425 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase RIF10, PNP 0.8600800025127535 92 Smo173339 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein ATSULA, GC1, SULA 0.859635326956232 95 Smo102526 Fructose-1,6-bisphosphatase, chloroplastic OS=Brassica napus 0.8592863326639185 94 Smo125820 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 0.8586090557606646 95 Smo407760 (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana 0.8584948185911522 96 Smo11088 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana 0.8580316810300785 97 Smo98780 Monooxygenase 2 OS=Arabidopsis thaliana CTF2A 0.8577739239580803 98 Smo85469 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) TAPX 0.8569448375742987 99 Smo413123 RAP domain-containing protein, chloroplastic OS=Oryza sativa subsp. japonica ATRAP, RAP 0.855380724648185 100