Sequence Description Alias PCC hrr Smo164801 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE 0.9571998110842899 2 Smo118724 0.9418417682728699 2 Smo142036 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana 0.9341312452569459 3 Smo117159 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1 0.9322985368400214 4 Smo85469 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) TAPX 0.9303935513208706 5 Smo78010 Protein modification.protein folding and quality control.protein folding catalyst activities.TF nascent polypeptide chaperone 0.9296121925173818 7 Smo83448 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor 0.9275077190126936 7 Smo154280 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1 0.9273597560497165 8 Smo79664 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.9269451836409972 9 Smo438805 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312 0.9212260954159441 10 Smo77541 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana 0.9195918746767777 11 Smo413766 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.bifunctional methylthioribulose-1-phosphate dehydratase and enolase-phosphatase 0.917842646883083 12 Smo11301 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica 0.9162039742808279 13 Smo445517 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2 0.9151779788675486 14 Smo428281 0.9132584680926346 15 Smo81276 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 0.9126119007186387 16 Smo156007 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1 0.9122341020167273 17 Smo74924 0.910815953720543 18 Smo93752 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1 0.910454327959456 19 Smo410877 SPD1 0.9102664423685447 20 Smo166436 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana EX1 0.909902631916854 21 Smo271353 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase QPT 0.9070294449506718 22 Smo26412 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana 0.9068668806195316 23 Smo91982 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease 0.906553024768649 24 Smo90520 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PYG7 protein 0.9064833311929255 25 Smo92083 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana 0.9058393931889284 26 Smo119009 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase SYCO ARATH 0.9048687608195256 27 Smo64370 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor 0.9013074522805734 28 Smo145357 RNA processing.organelle machineries.ribonuclease activities.RNase R exoribonuclease RNR1, ATMTRNASEII, EMB2730 0.900657376473072 29 Smo89990 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana 0.9003488819187307 38 Smo442087 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor 0.8998507111344689 31 Smo120007 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.8987118685815068 32 Smo148310 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component CLP2, CLPR2, NCLPP2 0.8975075751420211 33 Smo405512 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component 0.8973719075279665 34 Smo418636 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC13 component 0.8964234696030802 35 Smo165421 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase 0.8959944335695619 36 Smo270556 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana 0.8959379838348134 37 Smo439642 0.8954475873446015 38 Smo409004 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.8946126138952387 39 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.88942263103494 40 Smo186974 tRNA ligase 1 OS=Arabidopsis thaliana ATRNL, AtRLG1, RNL 0.8861250650389606 55 Smo81522 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component FTSH12, EMB36, EMB156, EMB1047 0.8846260339554475 42 Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.8842148547370018 48 Smo47118 0.883861519090442 44 Smo80171 Protein biosynthesis.organelle translation machineries.translation elongation.EF-P elongation factor 0.8831292286190244 45 Smo74191 Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.SecY2 component SCY2, EMB2289 0.8829782626349936 46 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.8826333319144984 47 Smo172681 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase ERS, OVA3, ATERS 0.882115646447089 48 Smo439600 ABC transporter F family member 5 OS=Arabidopsis thaliana ATGCN5, GCN5 0.8817459047344982 49 Smo75120 Protein root UVB sensitive 5 OS=Arabidopsis thaliana RUS5 0.880407743200564 50 Smo180624 Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.SecY2 component SCY2, EMB2289 0.8803835653833123 51 Smo85220 0.8788234391961696 52 Smo146971 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1 0.8784804600118403 53 Smo60327 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.SMC6 component ATRAD18, SMC6B, MIM 0.877301584270568 54 Smo447828 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana 0.8763577958001012 55 Smo94171 Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase OVA6, PRORS1 0.8763419978167591 56 Smo175826 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana 0.8756898560783211 57 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.8733477341953699 65 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.8732259962348369 59 Smo440582 ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana SRS2, ATSRS2 0.8725150744675915 80 Smo437676 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2 0.8719061338481249 61 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.8696318332730577 63 Smo91321 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 0.8692998156409395 63 Smo146755 0.8687189862772282 64 Smo82310 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP POLGAMMA2 0.8682695194077745 65 Smo177176 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana 0.8682307744310368 66 Smo102611 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease 0.8679654113025251 67 Smo417577 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase G6PD2 0.8678395336760062 68 Smo405767 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana FTSH12, EMB36, EMB156, EMB1047 0.8673150490369967 69 Smo73828 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana 0.8673127109675127 70 Smo442726 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) 0.8657062845819059 71 Smo79851 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2 0.8652121973046178 89 Smo412574 RAP domain-containing protein, chloroplastic OS=Arabidopsis thaliana ATRAP, RAP 0.8647585757074624 73 Smo74261 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum PDS3, PDS, PDE226 0.8635636817105166 95 Smo414486 0.8630886525794568 75 Smo231207 Laccase-13 OS=Oryza sativa subsp. japonica LAC11 0.8629908314377955 76 Smo139232 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.lysine N-methyltransferase 0.8627297327377472 77 Smo73985 RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana 0.8606954840230281 78 Smo405769 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana 0.8606372521409406 79 Smo424522 0.8606256234998195 80 Smo93050 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana emb2004 0.8591704739345498 81 Smo419922 0.8584224469363889 82 Smo168153 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CPN60B, LEN1 0.8583320136218793 83 Smo126894 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) 0.8576312888862511 84 Smo75780 DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana 0.8569407051468193 85 Smo441624 Aldo-keto reductase family 4 member C10 OS=Arabidopsis thaliana 0.85612521667042 86 Smo47998 Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana 0.8552181131788055 87 Smo122255 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase ATHRS1, HRS1 0.8543528725914363 88 Smo412905 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.8523646110352585 89 Smo100790 Thiocyanate methyltransferase 1 OS=Brassica oleracea 0.8517226214259986 90 Smo116848 Protein biosynthesis.aminoacyl-tRNA synthetase activities.alanine-tRNA ligase 0.8504800654254374 92 Smo80789 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 158.0) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8504355544473362 93 Smo75404 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter ATATM1, ATM1 0.8486173366147446 94 Smo228849 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.8479738156455192 95 Smo423505 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor 0.8479189006219603 96 Smo410009 0.8470081745336473 98 Smo80721 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.8468199650853082 100