Sequence Description Alias PCC hrr Smo404623 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.9629800587227075 1 Smo438304 0.9588696081686612 2 Smo174036 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.SMC5 component SMC5 0.9573702835179809 3 Smo266749 emb1441 0.9523323636900245 6 Smo439648 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein ATPRP40C, PRP40C 0.9452374484120406 8 Smo429283 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-4 motor protein FRA1 0.9442229139539737 6 Smo441016 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.ELF7/PAF1 component ELF7 0.9400974796980812 22 Smo177985 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor PKL, GYM, CHR6, SSL2, CHD3 0.9290726836390448 34 Smo175555 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase HUB2 0.9279314366315994 18 Smo80512 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DCL1-HYL1 miRNA biogenesis complex.TOUGH component TGH 0.9271711625516065 16 Smo404232 SART-1 family protein DOT2 OS=Arabidopsis thaliana MDF, DOT2 0.9261509031911045 25 Smo437710 0.9254058470029944 16 Smo270432 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst ATPUB49, PUB49 0.9217255091965484 13 Smo424802 Chromatin modification-related protein EAF1 B OS=Arabidopsis thaliana 0.9216209607716491 32 Smo79168 0.9198707272380676 42 Smo440815 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.CHR5 component CHR5 0.9187171966349421 34 Smo441653 0.9160653589528835 17 Smo440812 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).RBM25 pre-mRNA splicing regulator 0.9149203429343792 30 Smo444132 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.9138112787315296 74 Smo166630 Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase SCPL24, BRS1 0.9129384027068382 20 Smo441074 FIP1[V]-like protein OS=Arabidopsis thaliana FIP1[V], ATFIP1[V], FIPS5, ATFIPS5 0.9120531933921828 25 Smo405643 emb1441 0.9111337995472633 22 Smo410528 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.PININ component 0.9101260360330374 30 Smo412943 0.9091635230387553 24 Smo113277 0.9089206096161695 33 Smo231973 Growth arrest-specific protein 8 homolog OS=Chlamydomonas reinhardtii 0.9083447564904104 26 Smo85327 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SR140 snRNP-associated protein 0.9078709939993975 30 Smo446467 0.9035535918140416 28 Smo439455 0.9035109224172186 29 Smo421352 RNA processing.RNA splicing.U12-type-intron-specific minor spliceosome.U11 small nuclear ribonucleoprotein particle (snRNP).U11-59K snRNP component 0.903483243691863 30 Smo96727 RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component GTA02, GTA2 0.9019209663513786 31 Smo96986 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor 0.9007719808364975 32 Smo402573 0.9006752035702545 33 Smo82731 0.9002256149461028 34 Smo430219 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.EME1 component ATEME1B, EME1B 0.8996600158198244 35 Smo145504 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase TOP1BETA, TOP1 0.8996237705170365 50 Smo407112 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana SUA 0.8994746324770274 44 Smo449156 RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component GTA02, GTA2 0.8985820527034711 40 Smo447293 0.8984021665932582 39 Smo437809 0.8981094301591744 40 Smo165735 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp28 RNA helicase 0.8977859258630086 64 Smo107633 Cactin OS=Arabidopsis thaliana 0.8977393565988091 68 Smo411205 DDT domain-containing protein DDR4 OS=Arabidopsis thaliana 0.8970676427573628 43 Smo404271 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO maturation.OTS protease 0.8969620232904395 44 Smo402481 EMB140 0.8953912278285704 47 Smo47017 Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana 0.8949013350250148 46 Smo407204 ELF5 0.8947405050829905 47 Smo440209 0.894222275182564 51 Smo449187 0.8929646242071254 50 Smo446942 Protein EMSY-LIKE 3 OS=Arabidopsis thaliana 0.8920736891491566 61 Smo136622 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.RAD50 component 0.8915488444153139 52 Smo440320 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpX chaperone component 0.8915214501720091 53 Smo147068 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.SSL2/XPB-type subunit XPB1, ATXPB1 0.8902630505736976 55 Smo90549 DNA repair endonuclease UVH1 OS=Arabidopsis thaliana UVH1, ATRAD1, RAD1 0.890209820214674 70 Smo141188 0.8899805598247967 57 Smo78506 0.8899805598247967 58 Smo418782 0.8891937219530555 91 Smo441095 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad54-like group.ATRX chromatin remodeling factor CHR20, ATRX 0.889086442162763 73 Smo440352 Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.SNL-type component SNL4 0.8884277950013013 61 Smo416934 Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana 0.8878082502395771 62 Smo437796 0.8868286469143178 63 Smo402256 ROS3 0.8864466580013645 64 Smo440817 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED26 component 0.8859825874431834 65 Smo402621 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40A pre-mRNA-processing protein ATPRP40A, PRP40A 0.8859780251422428 66 Smo92145 0.8848883168331848 68 Smo73545 Amino acid metabolism.degradation.arginine.arginase 0.8844137593774091 69 Smo232989 Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.883480478953879 72 Smo229806 Protein modification.protein folding and quality control.N-glycan-dependent machinery.MNL alpha-1,2 exomannosidase 0.8830854115881676 73 Smo173329 0.8823556718853395 74 Smo423605 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana PLE, MAP65-3, ATMAP65-3 0.881796076308187 76 Smo90375 WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana HOS15 0.8816540307996958 77 Smo405818 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).DNA resection MRE11-RAD50-NBS1 (MRN) complex.RAD50 component RAD50, ATRAD50 0.8816064749496805 78 Smo164119 Protein modification.phosphorylation.CAMK kinase superfamily.CDPK kinase CPK28 0.8807793981191713 80 Smo439571 Protein degradation.peptidase families.cysteine-type peptidase activities.SUMO-specific protease families.OTS protease 0.8806760718698119 81 Smo122486 Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana SMU2 0.8803685438623735 83 Smo437242 Cell cycle.organelle machineries.organelle fission.mitochondrion and peroxisome division.DRP3 dynamin-like protein DRP3A, ADL2 0.8800287483317699 84 Smo177444 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana 0.8799041068016171 85 Smo150191 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana ATRDRP1, RDR1 0.8798866148041674 86 Smo406091 RNA biosynthesis.transcriptional activation.TIFY transcription factor TIFY4A, PPD1 0.8797625537566681 87 Smo74857 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.2 protease TPP2 0.8773635279906925 91 Smo114128 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIe basal transcription factor complex.alpha subunit 0.8767010342995203 92 Smo20706 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays EMB1865 0.876235566886305 93 Smo163608 UBP1-associated protein 2C OS=Arabidopsis thaliana 0.8756398995555149 94 Smo86145 Pumilio homolog 1 OS=Arabidopsis thaliana APUM4, PUM4 0.8754129628473696 95 Smo440203 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Iswi chromatin remodeling factor CHR11 0.8745923784701856 96 Smo442773 0.874505247920694 97 Smo421223 0.8741963573599028 98 Smo169617 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).PRPF3 snRNP-associated protein 0.8741008056229929 99 Smo441010 0.8739302878822194 100