Sequence Description Alias PCC hrr Smo174833 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase HCEF1 0.9434376822660514 3 Smo270825 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-2 0.9303961292431234 7 Smo266585 Photosynthesis.photorespiration.glycolate oxidase 0.9247638133869343 3 Smo439234 Protein modification.peptide maturation.plastid.AraSP plastidial inner envelope protease ARASP 0.9217004225337401 4 Smo448162 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana 0.9153803064322209 16 Smo97883 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A1 activities.PC-PLA1-type phospholipase A1 0.9106372403684663 7 Smo267533 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase 0.9078975852831227 10 Smo182694 Photosynthesis.calvin cycle.phosphoribulokinase PRK 0.90753116605701 21 Smo272095 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component 0.906198638408283 10 Smo449377 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2 0.9049898277141509 10 Smo145611 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGT2, AOAT2 0.8977908852616779 33 Smo160384 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.8968004889599869 31 Smo268623 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase RCA 0.8966993128391226 30 Smo441569 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL 0.8965209512006178 14 Smo31438 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.896064307551116 15 Smo227615 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.8934531081280968 31 Smo448213 0.8917848478987621 35 Smo415599 0.8913083365492237 18 Smo96850 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 0.8909208323834404 19 Smo102513 Carbonic anhydrase OS=Flaveria bidentis BCA4, CA4, ATBCA4 0.8892006049279566 26 Smo272235 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2 0.8884151011655909 21 Smo111807 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor(50.1.1 : 205.6) & Short-chain dehydrogenase/reductase 2b OS=Arabidopsis thaliana 0.887502812120878 22 Smo431963 0.8871425684646616 23 Smo271030 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.geranylgeranyl reductase ChlP 0.88677506831503 24 Smo228964 Amino acid metabolism.biosynthesis.aspartate family.asparagine.asparagine aminotransaminase AGT1, SGAT, AGT 0.8854568834669306 25 Smo90782 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana 0.88531904613031 26 Smo109271 Phytohormones.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE family.CLE precursor protein 0.8844713739986494 27 Smo233481 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor ATRAB8D, ATRABE1B, RABE1b 0.8843752277126844 28 Smo126152 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana 0.8840642865035506 29 Smo149815 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein 0.8822026681031896 30 Smo420519 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) 2CPB, 2-Cys Prx B 0.8820067350958412 31 Smo79425 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase 0.8817691656034147 51 Smo444108 Cytoskeleton.cp-actin-dependent plastid movement.PMIR cp-actin stability co-factor 0.8817177842737077 33 Smo145704 0.881043893892668 43 Smo75562 0.880896819077675 35 Smo235693 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.8802839633768533 67 Smo96271 0.8786032056545379 37 Smo121095 Coenzyme metabolism.lipoic acid synthesis.lipoate synthase LIP1 0.8773928404451075 45 Smo169778 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL2 0.8773859656027182 39 Smo177791 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.8769396021338092 40 Smo82221 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana 0.8762445441276314 41 Smo270723 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component CPSRP43, CAO 0.8752726589512604 42 Smo445683 Nutrient uptake.copper uptake.reduction-based uptake.FRO metal ion-chelate reductase ATFRO6, FRO6 0.875130574610769 68 Smo166238 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3 0.8728697682439517 62 Smo270566 Photosynthesis.photorespiration.serine hydroxymethyltransferase STM, SHM1, SHMT1 0.8715663124208595 49 Smo10032 Protein TSS OS=Arabidopsis thaliana 0.8707434981868226 46 Smo64109 0.8700138714432492 47 Smo93150 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.8694716179989571 48 Smo159420 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT 0.8685197235293063 49 Smo98780 Monooxygenase 2 OS=Arabidopsis thaliana CTF2A 0.8663670546937802 50 Smo173368 Solute transport.carrier-mediated transport.APC superfamily.NRAMP metal cation transporter NRAMP6, ATNRAMP6 0.8655828551291038 51 Smo438768 GDSL esterase/lipase At5g03810 OS=Arabidopsis thaliana 0.864706331594245 52 Smo266613 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC 0.8645856609439659 53 Smo270155 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter GPT1, ATGPT1 0.8621531116575666 54 Smo437924 Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica DFL2, GH3-10 0.8603766060749951 55 Smo271457 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB 0.8599082934470503 56 Smo403333 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana LHCA5 0.8578346725527958 57 Smo62145 Solute transport.carrier-mediated transport.MFS superfamily.FPN iron-regulated metal cation transporter 0.8553661352555509 58 Smo107618 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.854547732660958 59 Smo63552 Cytochrome P450 77A2 OS=Solanum melongena CYP77A4 0.8512529830065992 60 Smo10825 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana 0.850448344199194 61 Smo442777 RNA-binding protein BRN1 OS=Arabidopsis thaliana RBP-DR1, AtRBP-DR1 0.850442721574316 77 Smo155359 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS 0.8497460327794623 86 Smo67708 Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.8493232260642799 65 Smo144086 Phytohormones.abscisic acid.perception and signalling.membrane-localized receptors.ABAR chloroplast envelope-localized receptor CCH1, GUN5, CHLH, CCH, ABAR 0.8482640307450433 67 Smo139726 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH1 0.848139316121918 68 Smo82002 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor CRM3, HCF152 0.8478112368592067 69 Smo88976 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter 0.8470428718578954 70 Smo165329 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.8465804588600082 71 Smo438522 0.8462522439433655 73 Smo103361 0.845216808866878 92 Smo89989 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component ACSF, CHL27, CRD1 0.8450163226043551 75 Smo95906 Carbonic anhydrase, chloroplastic OS=Pisum sativum CA18, CA2, BETA CA2 0.8429194249511339 76 Smo183274 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.841724081030895 94 Smo125882 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhM component NDH-M 0.8417120100290574 78 Smo444388 0.8416280746048913 79 Smo147927 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit 0.8401636988030301 81 Smo228435 Photosynthesis.calvin cycle.phosphopentose epimerase RPE, EMB2728 0.8394156899228918 83 Smo98333 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor 0.8380658478117824 95 Smo78847 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.8378755720441492 86 Smo14944 Solute transport.channels.MIP family.Nodulin-26-like intrinsic protein (NIP-type) NIP6, NIP6;1, NLM7 0.8376687608469054 87 Smo104889 Solute transport.carrier-mediated transport.APC superfamily.APC family.cationic amino acid transporter (CAT-type) AAT1, CAT1 0.8375736435958246 88 Smo93539 Solute transport.carrier-mediated transport.APC superfamily.NCS-1 family.nucleobase cation transporter (PLUTO-type) 0.8372021714837103 89 Smo230239 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor(50.1.1 : 517.3) & Probable mannitol dehydrogenase OS=Medicago sativa ATCAD9, CAD9 0.8357618449813246 91 Smo96029 Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana 0.835588274213931 92 Smo230713 Oryzain alpha chain OS=Oryza sativa subsp. japonica XCP1 0.8348326840414451 93 Smo107107 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor GUN4 0.8329025022508478 95 Smo229587 Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar 0.8325767578044787 96 Smo232963 Uncharacterized protein At4g15545 OS=Arabidopsis thaliana 0.8322899822339729 98 Smo174988 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein OHP2 0.8318214554271535 99 Smo172464 Protein EXORDIUM-like 2 OS=Arabidopsis thaliana EXL2 0.8313138181489529 100