Sequence Description Alias PCC hrr Smo50862 Probable NAD kinase 2, chloroplastic OS=Oryza sativa subsp. japonica 0.9517935685980768 1 Smo82367 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica 0.9494494004180581 3 Smo173134 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA 0.9331540665772725 5 Smo145704 0.9308288041550129 4 Smo428906 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor APRR2, PRR2 0.9305545993092129 5 Smo145611 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGT2, AOAT2 0.9240915515213596 14 Smo272067 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase ATCCD1, CCD1, NCED1, ATNCED1 0.9221701926531306 7 Smo438117 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor CHUP1 0.9216512835329156 37 Smo21211 Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana 0.9212580005146204 15 Smo107634 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2 0.920567289213111 14 Smo268623 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase RCA 0.9199998136198243 14 Smo444108 Cytoskeleton.cp-actin-dependent plastid movement.PMIR cp-actin stability co-factor 0.9166828504538795 12 Smo448213 0.916105867317838 13 Smo267662 Phytohormones.ethylene.perception and signal transduction.ETR/ERS-type receptor protein ETR, ETR1, EIN1, AtETR1 0.9100891798025205 40 Smo174630 Uncharacterized protein At4g15545 OS=Arabidopsis thaliana 0.909311310392716 15 Smo161485 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transketolase 0.9086791859050187 34 Smo184811 Carbohydrate metabolism.trehalose metabolism.trehalose-6-phosphate synthase ATTPS1, TPS1 0.9054640140965606 23 Smo159420 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT 0.9034434394244459 19 Smo267361 0.9032955627319723 19 Smo79425 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase 0.9031390420327511 24 Smo99030 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter MRP6, ATMRP6, ABCC8 0.8992400009455176 21 Smo442478 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor 0.8987222310734252 22 Smo60775 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase 0.8985858018040698 23 Smo447004 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA1, KAC1 0.897263895883694 48 Smo270566 Photosynthesis.photorespiration.serine hydroxymethyltransferase STM, SHM1, SHMT1 0.8972433464251562 25 Smo441980 0.8965769834946048 26 Smo270825 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-2 0.8960368203696205 27 Smo76749 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN7 0.8949310794725478 46 Smo439358 0.8944148782140364 29 Smo155359 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS 0.8924914469219589 30 Smo172950 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-4 motor protein FRA1 0.8919161396768525 31 Smo153563 Photosynthesis.photorespiration.glycine cleavage system.P-protein glycine dehydrogenase component AtGLDP2, GLDP2 0.8914125507846893 32 Smo160384 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.8912808508245642 33 Smo96850 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 0.8899517444633541 34 Smo145812 Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana 0.8894776477721835 35 Smo438203 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor CHUP1 0.8892304989383407 55 Smo421452 0.8889005333951165 37 Smo109271 Phytohormones.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE family.CLE precursor protein 0.8887215712251546 38 Smo173139 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana VAC1, ECB2, ATECB2 0.8865365074807636 40 Smo445683 Nutrient uptake.copper uptake.reduction-based uptake.FRO metal ion-chelate reductase ATFRO6, FRO6 0.8860316439827409 49 Smo448423 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT 0.8800379724421049 41 Smo154776 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase ATSS3, SS3 0.8800030926312014 42 Smo90782 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana 0.8791291541043216 43 Smo267533 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase 0.87826477248183 44 Smo105035 Cell cycle.organelle machineries.DNA replication.RNA primer removal.plastidial exonuclease 0.8774405472529321 45 Smo166238 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3 0.8749283681475686 57 Smo78366 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH13, OSA1, ATH13, ATOSA1 0.8748204816767122 47 Smo182694 Photosynthesis.calvin cycle.phosphoribulokinase PRK 0.8743646580860509 61 Smo228964 Amino acid metabolism.biosynthesis.aspartate family.asparagine.asparagine aminotransaminase AGT1, SGAT, AGT 0.8739040959184643 49 Smo96266 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana 0.8723978224746104 50 Smo62145 Solute transport.carrier-mediated transport.MFS superfamily.FPN iron-regulated metal cation transporter 0.8722477526267791 51 Smo183274 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.8674423180243762 52 Smo431963 0.865576509298329 53 Smo83798 0.8653017312600467 70 Smo149244 Solute transport.carrier-mediated transport.APC superfamily.HAK/KUP/KT potassium cation transporter KUP11 0.864841001639833 55 Smo107618 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.8640336929690579 56 Smo163545 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.8637821224004087 57 Smo73819 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase FC-II, FC2, ATFC-II 0.8627787141714734 97 Smo402072 0.8621114322771988 86 Smo144086 Phytohormones.abscisic acid.perception and signalling.membrane-localized receptors.ABAR chloroplast envelope-localized receptor CCH1, GUN5, CHLH, CCH, ABAR 0.8610690540584823 60 Smo270698 Cellular respiration.glycolysis.plastidial glycolysis.fructose-1,6-bisphosphate aldolase 0.860973819210014 84 Smo115488 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-XI kinase 0.8607516411775773 62 Smo442479 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3,VRN5) VIN3 0.8606708229882583 63 Smo149815 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein 0.8602831551068078 64 Smo63565 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana 0.8595995518059287 65 Smo169778 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase APL2 0.8580723681567003 66 Smo441723 Protein ECERIFERUM 26-like OS=Arabidopsis thaliana 0.85774200128565 67 Smo177791 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.8571576192916952 68 Smo148692 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor FUG1 0.8564071046304552 69 Smo96351 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) UVR2, PHR1 0.8553128155714518 70 Smo448162 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana 0.8545071076857775 92 Smo111807 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor(50.1.1 : 205.6) & Short-chain dehydrogenase/reductase 2b OS=Arabidopsis thaliana 0.8537868265584208 72 Smo447019 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HOX-like transcription factor HB-1 0.8530991814126327 78 Smo170150 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase ATATH8 0.852860606963091 78 Smo174833 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase HCEF1 0.8522965563758698 87 Smo11420 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase 0.8519478681180044 76 Smo166088 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC 0.850442721574316 77 Smo420519 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) 2CPB, 2-Cys Prx B 0.8501897814112231 78 Smo126213 Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana 0.8496401389205179 80 Smo74587 BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana 0.8489795666432289 80 Smo81992 RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor 0.8489231594087667 81 Smo130277 Lipid metabolism.sphingolipid metabolism.ceramidase activities.NCER neutral ceramidase 0.8486447275594644 83 Smo419975 Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica 0.8477740965042486 85 Smo935 Lipid metabolism.galactolipid and sulfolipid synthesis.galactolipid galactosyltransferase (SFR2) 0.847759132340286 86 Smo97883 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A1 activities.PC-PLA1-type phospholipase A1 0.8469355054021056 87 Smo438604 0.8465222017522068 88 Smo438313 Redox homeostasis.enzymatic reactive oxygen species scavengers.catalase CAT2 0.8453389195293924 89 Smo419371 0.8426567564094948 90 Smo270406 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase 0.8423432123399653 91 Smo440790 Zinc finger CCCH domain-containing protein 28 OS=Oryza sativa subsp. japonica 0.8417033999598563 92 Smo165469 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase ATCCD1, CCD1, NCED1, ATNCED1 0.8415201976224442 93 Smo125891 RNA processing.RNA modification.rRNA/tRNA methylation.TRM13 tRNA adenosine-methyltransferase 0.8378512605483484 97 Smo177305 Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana 0.837836141846071 98 Smo102513 Carbonic anhydrase OS=Flaveria bidentis BCA4, CA4, ATBCA4 0.8375852729644513 99 Smo10032 Protein TSS OS=Arabidopsis thaliana 0.8375309048868798 100