Sequence Description Alias PCC hrr Smo170091 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2 0.9493976213959604 2 Smo58058 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 0.9305333263906365 2 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.9129527200268873 22 Smo447716 0.9120861915655828 19 Smo98813 0.9118471726334766 7 Smo444786 0.9097195643039316 14 Smo416844 0.9085691862288023 9 Smo135281 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana 0.9069070096140364 8 Smo421525 Peroxidase 4 OS=Vitis vinifera PA2, ATPA2 0.9055449148817747 9 Smo164116 0.9045148311517438 10 Smo270688 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.9002647346882954 19 Smo85072 Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana 0.9001883308046741 12 Smo442094 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component 0.8996866199159176 13 Smo52692 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana 0.896839722653477 14 Smo172755 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IV kinase CRCK2 0.8902435875920222 15 Smo438182 0.8898038639814903 20 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8843043732674065 44 Smo438080 Solute transport.carrier-mediated transport.MFS superfamily.NRT1/PTR anion transporter ATPTR2, PTR2, PTR2-B, ATPTR2-B, NTR1 0.8807780055649237 18 Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.8801933598473104 56 Smo442385 Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana 0.879409279270707 20 Smo80721 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.8792362229880405 25 Smo85032 Alpha-galactosidase 3 OS=Arabidopsis thaliana 0.8791522014963208 22 Smo61778 0.8773216549534124 23 Smo96554 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.CTP synthetase emb2742 0.8772167773878692 29 Smo150329 Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana AIR3 0.8768206033958247 35 Smo445274 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst FKBP62, ROF1, ATFKBP62 0.8760084890783431 43 Smo141109 0.874593731681426 37 Smo177598 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) 0.8744280128389961 28 Smo152730 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY 0.8739366867577303 31 Smo422148 Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana 0.8738586936411649 30 Smo136585 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana 0.8719331373233074 31 Smo84784 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1 0.8703006429727876 54 Smo418465 0.8700021726756005 55 Smo117919 Carbohydrate metabolism.sucrose metabolism.degradation.hexokinase ATHXK1, HXK1, GIN2 0.8694600103241616 34 Smo141010 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor COL3, ATCOL3 0.8689574768626676 35 Smo12282 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.8677933015763557 46 Smo437639 0.8650443683118654 37 Smo152047 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP 0.864704458150337 68 Smo419739 0.8636754261110036 39 Smo162354 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.863368805568266 40 Smo84597 0.8633482800105384 45 Smo442726 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) 0.8631570966392226 58 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.861433330044109 81 Smo10677 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138 0.8613083159307269 49 Smo78627 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG25, ATXR7 0.8596494795474775 45 Smo418636 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC13 component 0.8583909301345637 66 Smo128521 Photosynthesis.photophosphorylation.ATP synthase complex.assembly.CGL160 factor 0.8578640899961356 65 Smo270181 0.8577884922425992 48 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.8564235374682736 78 Smo42040 Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum 0.8558764027911363 50 Smo99402 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component CCB1 0.8552221998231875 51 Smo271998 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.8547020495330453 52 Smo105356 Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana 0.8513014738717302 53 Smo74506 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana 0.8490903189712832 54 Smo12954 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 0.8486128366252009 70 Smo89270 Putative GTP diphosphokinase RSH1, chloroplastic OS=Oryza sativa subsp. japonica 0.8482221024009327 56 Smo78872 Secondary metabolism.nitrogen-containing secondary compounds.alkaloids.indole alkaloid synthesis.aromatic L-amino acid decarboxylase 0.8480633185195241 57 Smo130412 OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.8469393365767255 58 Smo440420 0.8457277708958428 59 Smo84550 SH2 domain-containing protein A OS=Arabidopsis thaliana STATLA, ATSHA, SHA 0.8449575171346111 60 Smo414066 0.8449234111700877 61 Smo440949 RNA biosynthesis.transcriptional activation.BBR/BPC transcription factor BPC3, ATBPC3 0.8437698536199346 62 Smo442088 Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana CRR22 0.842797043346947 63 Smo140066 External stimuli response.light.UV-A/blue light.zeitlupe-mediated photoperception.GIGANTEA regulator protein GI, FB 0.842296877482059 64 Smo409941 0.8416840884459182 65 Smo407040 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DEGP8, DEG8 0.8390180062602374 66 Smo89033 Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.8380080252812351 67 Smo447679 Leucine-rich repeat-containing protein ODA7 OS=Chlamydomonas reinhardtii 0.8362047749645795 68 Smo230417 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.MPE1 component 0.8361839574270465 69 Smo120890 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY 0.8347900825753705 70 Smo407721 Translation factor GUF1 homolog, chloroplastic OS=Oryza sativa subsp. japonica 0.8333592366890247 93 Smo163827 Beta-glucosidase 25 OS=Oryza sativa subsp. japonica BGLU40 0.8327582774312667 73 Smo271002 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1 0.8299532261722513 74 Smo65804 Protein TAB2 homolog, chloroplastic OS=Oryza sativa subsp. japonica 0.8299372187589317 75 Smo177641 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.thiamin monophosphate phosphatase (Th2) 0.8298170388491978 76 Smo11287 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.NCED carotenoid cleavage dioxygenase 0.8295961061699492 77 Smo79134 Secondary metabolism.nitrogen-containing secondary compounds.alkaloids.indole alkaloid synthesis.aromatic L-amino acid decarboxylase 0.8292737599718603 78 Smo95815 Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana 0.8283096310423386 79 Smo143057 0.825686283478183 80 Smo425390 0.8226316977443919 82 Smo67262 Thioredoxin-like protein CDSP32, chloroplastic OS=Oryza sativa subsp. japonica ATCDSP32, CDSP32 0.8209650696869233 83 Smo99603 DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica emb1138 0.820225058754234 85 Smo85806 F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana 0.8187593211410308 86 Smo60423 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component 0.8163495995114293 87 Smo406591 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor 0.8158315418418254 95 Smo441971 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamyl-tRNA-dependent amidotransferase complex.GatB component GATB 0.8154533109137954 89 Smo441564 ACD31.2, ACD32.1 0.8151856582233187 90 Smo410662 0.8150774601319155 91 Smo410507 0.814978162665446 92 Smo80789 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 158.0) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8142862776450874 94 Smo403442 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana 0.8128454904752344 97 Smo70744 RNA biosynthesis.transcriptional activation.GRAS transcription factor 0.8077132568212264 99 Smo404930 0.8075573435855017 100