Sequence Description Alias PCC hrr Smo409004 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.9384241342831234 2 Smo89990 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana 0.9314622748790812 5 Smo444750 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component 0.931279486109561 3 Smo402861 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component TAF2 0.9264648425426824 17 Smo442211 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761 0.9263926796764718 17 Smo231207 Laccase-13 OS=Oryza sativa subsp. japonica LAC11 0.924246517633318 6 Smo175555 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase HUB2 0.9216235084516787 28 Smo96986 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor 0.9197035814841732 11 Smo442673 Nutrient uptake.iron uptake.iron storage.PIC-type iron transporter 0.9175537375162576 9 Smo73828 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana 0.9175276201055066 10 Smo406615 0.9142180457526985 24 Smo430219 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.EME1 component ATEME1B, EME1B 0.9119717921635115 12 Smo154280 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1 0.9108175126533008 17 Smo424802 Chromatin modification-related protein EAF1 B OS=Arabidopsis thaliana 0.9095637241567944 50 Smo61619 Solute transport.channels.MSL mechanosensitive ion channel 0.909440768006711 15 Smo402586 0.9092200155889488 16 Smo92242 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor 0.9091971987759322 17 Smo122255 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase ATHRS1, HRS1 0.9062171639401068 18 Smo439455 0.9055762300379114 19 Smo153292 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component 0.9054068903377124 20 Smo82731 0.9034863188259241 27 Smo92017 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIV-type starch synthase ATSS4, SS4, SSIV 0.9030062445689049 22 Smo181800 0.9014516174955944 41 Smo80512 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DCL1-HYL1 miRNA biogenesis complex.TOUGH component TGH 0.9014284205823858 43 Smo75107 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase 0.9003130298586026 77 Smo439642 0.8994490356691177 27 Smo60327 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.SMC6 component ATRAD18, SMC6B, MIM 0.8980796691643784 28 Smo405542 Coiled-coil domain-containing protein 65 homolog (Fragment) OS=Chlamydomonas reinhardtii 0.8970450681351538 29 Smo441016 RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.ELF7/PAF1 component ELF7 0.8968604372561552 89 Smo403724 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.8965374363050794 31 Smo411205 DDT domain-containing protein DDR4 OS=Arabidopsis thaliana 0.8961628826228711 32 Smo163635 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC1/Tau95 component 0.8953569690744239 33 Smo440815 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.CHR5 component CHR5 0.8950529846032809 75 Smo439163 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1 0.8949522121588858 35 Smo270432 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst ATPUB49, PUB49 0.8935522785835284 38 Smo402481 EMB140 0.8921594455878062 58 Smo102849 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor ATCHR12 0.8911283500796612 40 Smo164801 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE 0.8884947225065585 41 Smo76001 0.8875970544826159 42 Smo91321 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 0.8872880208328562 43 Smo99919 0.8855506049034787 44 Smo437796 0.8849312133917713 45 Smo404623 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.8845832893886505 46 Smo448695 0.8832935628510046 48 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.8831995578295824 52 Smo271353 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase QPT 0.8823614974152396 52 Smo440740 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase 0.8811403731086231 53 Smo446942 Protein EMSY-LIKE 3 OS=Arabidopsis thaliana 0.8807912318171814 98 Smo121150 0.8804489221333172 55 Smo437721 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120 0.8799544464359573 57 Smo413675 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana 0.8795040824069751 58 Smo421634 0.8786007872530425 59 Smo85410 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana 0.8780136371134666 60 Smo442872 0.8769458014977611 62 Smo91298 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VII/NDR kinase 0.8762577876098507 63 Smo419947 0.876235566886305 93 Smo437809 0.8755456997773564 65 Smo91982 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease 0.8742495177410726 66 Smo439153 0.8738011700877273 67 Smo88014 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase 0.8733006653667329 68 Smo419047 0.8732376398143056 69 Smo410009 0.8725217851115136 70 Smo120007 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.8720350875422791 72 Smo79851 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2 0.8712401076865229 73 Smo429547 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Ris1 chromatin remodeling factor 0.8711952820261321 74 Smo11301 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica 0.8710930965742195 75 Smo403334 DNA damage response.DNA repair polymerase activities.DNA polymerase kappa (POLK) 0.870657712571332 76 Smo76814 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic56 component 0.8703300066452112 95 Smo412943 0.8702675489513073 78 Smo76216 Protein modification.phosphorylation.STE kinase superfamily.MAP3K-MEKK kinase MAP3KA, MAPKKK3 0.8701329228145408 96 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.8695336057867407 80 Smo118926 RNA biosynthesis.transcriptional activation.E2F/DP transcription factor 0.8694588585818234 81 Smo442087 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor 0.8693569444190978 82 Smo438805 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312 0.8692917738185394 83 Smo422973 0.8689735784315343 84 Smo438647 Multi-process regulation.circadian clock.TOC1 evening oscillator component APRR1, AtTOC1, TOC1, PRR1 0.8686619061043369 86 Smo84658 Chromatin organisation.histone modifications.histone acetylation.MYST-type histone acetyltransferase HAM1 0.8686431889944222 87 Smo424522 0.8677933437637169 88 Smo415636 0.8671781973327005 90 Smo35546 High mobility group B protein 15 OS=Arabidopsis thaliana 0.8671563248992638 91 Smo156007 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1 0.8669779691333743 92 Smo166503 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8661942778882827 93 Smo410333 0.8652018497046643 96 Smo146755 0.8650688226439123 97 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.8645951766183124 100