Sequence Description Alias PCC hrr Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.9356666509532954 8 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.9343834993431335 13 Smo12954 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 0.9311001886554372 3 Smo128521 Photosynthesis.photophosphorylation.ATP synthase complex.assembly.CGL160 factor 0.9261855374184967 4 Smo177598 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) 0.9260184234315825 5 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.9177925260031474 11 Smo96554 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.CTP synthetase emb2742 0.910926644621241 9 Smo271998 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.9105375657553096 8 Smo73844 0.9085691862288023 9 Smo75404 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter ATATM1, ATM1 0.904310272641996 10 Smo440740 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase 0.9018506784921527 17 Smo95815 Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana 0.899957501294191 12 Smo442872 0.8992792440118214 19 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.8989714233042485 24 Smo418465 0.8988253010245227 27 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.8983850257953617 35 Smo146755 0.898158189773664 18 Smo135281 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana 0.8959901263288752 18 Smo10677 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138 0.8959252911490773 31 Smo152047 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP 0.8952379804948424 39 Smo430784 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.8951780954909685 21 Smo407721 Translation factor GUF1 homolog, chloroplastic OS=Oryza sativa subsp. japonica 0.8926184267462494 22 Smo84784 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1 0.8907843821673636 33 Smo82310 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP POLGAMMA2 0.8903889314326142 24 Smo170091 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase SQD2 0.8899553227144373 25 Smo166773 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana EMB2083 0.887213910021803 31 Smo442726 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) 0.8832697528565613 33 Smo141109 0.8823738304179884 29 Smo58058 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 0.8816805475993568 29 Smo130412 OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.8812481500936304 30 Smo438647 Multi-process regulation.circadian clock.TOC1 evening oscillator component APRR1, AtTOC1, TOC1, PRR1 0.8807132733212859 31 Smo163827 Beta-glucosidase 25 OS=Oryza sativa subsp. japonica BGLU40 0.8803837755420524 32 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.8800333846104638 33 Smo444786 0.8795030280185009 34 Smo26412 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana 0.8794472165306428 47 Smo12282 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.8794348297722321 36 Smo152730 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY 0.8791279282185738 37 Smo80721 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.8758451087579208 38 Smo406591 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor 0.8754493546209398 39 Smo442385 Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana 0.8751712037189611 40 Smo99603 DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica emb1138 0.8739763802186444 41 Smo103638 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana 0.873737883514443 42 Smo270181 0.8733639105812344 43 Smo447716 0.873357632942665 44 Smo418636 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC13 component 0.8726109186560317 50 Smo410333 0.8726009942620917 64 Smo101296 Solute transport.carrier-mediated transport.MFS superfamily.NTT ATP:ADP antiporter NTT1, ATNTT1 0.87239895735086 47 Smo170457 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 134.6) 0.8718692073915881 48 Smo61778 0.8707662020641964 49 Smo84550 SH2 domain-containing protein A OS=Arabidopsis thaliana STATLA, ATSHA, SHA 0.8706698505820109 50 Smo168153 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CPN60B, LEN1 0.8699132824254401 51 Smo419739 0.8682012055897544 52 Smo80789 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 158.0) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8678704361468609 53 Smo52692 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana 0.8658938278452596 54 Smo118724 0.8658554350037998 79 Smo81522 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component FTSH12, EMB36, EMB156, EMB1047 0.8649372450849218 72 Smo270688 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.8646307150349329 57 Smo106218 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme 0.8644330825355924 75 Smo73985 RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana 0.8641124071691241 59 Smo150329 Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana AIR3 0.8632797236679547 60 Smo405767 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana FTSH12, EMB36, EMB156, EMB1047 0.8608901094363036 61 Smo410507 0.8607362014494802 62 Smo93752 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1 0.8603424048927383 63 Smo422148 Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana 0.8593539747362614 64 Smo102611 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease 0.8573417757359919 66 Smo143057 0.8570681905199928 66 Smo110000 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8565611576268667 67 Smo445274 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst FKBP62, ROF1, ATFKBP62 0.8544324819343289 68 Smo443419 0.8540391978378536 69 Smo74924 0.8534706227057242 70 Smo89033 Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.8534631526491471 71 Smo425390 0.8532587564123617 72 Smo439181 0.8523641963530313 73 Smo77541 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana 0.8514489119250354 74 Smo178515 Peptide methionine sulfoxide reductase OS=Lactuca sativa PMSR4 0.8511974136526125 75 Smo146971 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1 0.8475003325945709 76 Smo91321 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 0.8472511778034173 95 Smo438182 0.8468210099092915 78 Smo74506 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana 0.8460950738414923 79 Smo78872 Secondary metabolism.nitrogen-containing secondary compounds.alkaloids.indole alkaloid synthesis.aromatic L-amino acid decarboxylase 0.8449849170175722 81 Smo85072 Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana 0.8432992830135811 82 Smo172755 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IV kinase CRCK2 0.842931266553194 83 Smo418519 0.8418302434415057 84 Smo99919 0.8411962235889661 85 Smo120890 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY 0.8406705343829918 86 Smo164116 0.8378505666381091 88 Smo442094 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component 0.8375955395375684 90 Smo413123 RAP domain-containing protein, chloroplastic OS=Oryza sativa subsp. japonica ATRAP, RAP 0.834485910210448 92 Smo421525 Peroxidase 4 OS=Vitis vinifera PA2, ATPA2 0.8342361796062909 93 Smo271002 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1 0.8338585984951271 94 Smo98813 0.8334241749875639 95 Smo405512 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component 0.8333302515291551 96 Smo444048 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP2 OS=Arabidopsis thaliana 0.8324160410434143 97 Smo440420 0.8323783605085998 98 Smo141010 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor COL3, ATCOL3 0.8317626920656523 99 Smo230417 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.MPE1 component 0.8312969597962868 100