Sequence Description Alias PCC hrr Smo160384 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.951999751731973 2 Smo423707 0.9504700382575297 4 Smo174833 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase HCEF1 0.9497649757143197 3 Smo173339 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein ATSULA, GC1, SULA 0.9465349671436596 4 Smo227615 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.9400586362147392 5 Smo235693 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.9398216727600315 9 Smo102513 Carbonic anhydrase OS=Flaveria bidentis BCA4, CA4, ATBCA4 0.9362703509593574 7 Smo91144 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101 0.9337444948313908 12 Smo79425 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase 0.9330356533295399 9 Smo448328 Photosynthesis.photophosphorylation.pseudo-cyclic electron flow.flavodiiron protein 0.9297803249221606 14 Smo431963 0.9287981849726366 11 Smo166238 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein LPA3 0.9253489075154858 14 Smo90536 Protein modification.S-glutathionylation and deglutathionylation.glutathione S-transferase activities.class lambda 0.9192138996138578 15 Smo403333 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana LHCA5 0.9177810979600631 14 Smo10032 Protein TSS OS=Arabidopsis thaliana 0.9176077606923452 15 Smo166088 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC 0.9153803064322209 16 Smo420519 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) 2CPB, 2-Cys Prx B 0.9104486619542043 17 Smo169254 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1 0.9091025764425649 20 Smo121095 Coenzyme metabolism.lipoic acid synthesis.lipoate synthase LIP1 0.9081975661488121 19 Smo268187 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.DXS 1-deoxy-D-xylulose 5-phosphate synthase CLA, DXS, CLA1, DEF, DXPS2 0.9079258978098378 20 Smo145704 0.9077009679725432 21 Smo64109 0.9066196838394257 22 Smo93150 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.9063671785797939 23 Smo272095 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component 0.9061094060518132 24 Smo429956 0.9057429292477417 25 Smo448213 0.904734029753102 26 Smo109271 Phytohormones.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE family.CLE precursor protein 0.9011980257038416 27 Smo441569 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL 0.9008336341160944 28 Smo270566 Photosynthesis.photorespiration.serine hydroxymethyltransferase STM, SHM1, SHMT1 0.8962325035058603 29 Smo271457 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB 0.8949640321428028 30 Smo82221 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana 0.894902145328507 31 Smo131328 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase ATCPO-I, LIN2, HEMF1 0.893962592476963 32 Smo182694 Photosynthesis.calvin cycle.phosphoribulokinase PRK 0.893687256339748 38 Smo117112 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor APE1 0.8926587863208447 34 Smo183274 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.8911863123466194 35 Smo424167 0.888182294540072 36 Smo270825 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPA-2 0.8879576645510271 37 Smo165329 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.8874806193641043 38 Smo153129 Protein STRICTOSIDINE SYNTHASE-LIKE 5 OS=Arabidopsis thaliana SSL5, YLS2 0.8871003689784274 39 Smo103361 0.8868490879912087 40 Smo169553 0.8861045024012135 41 Smo439518 Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana 0.8860450798530011 42 Smo98780 Monooxygenase 2 OS=Arabidopsis thaliana CTF2A 0.8859740294221828 43 Smo136561 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana 0.8851210655570464 44 Smo229587 Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar 0.884996235852625 45 Smo63559 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana 0.8840479249017162 54 Smo271018 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1 0.8838462207122827 47 Smo98333 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor 0.8836676658481417 48 Smo60716 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726 0.8824524763543858 49 Smo266585 Photosynthesis.photorespiration.glycolate oxidase 0.8804846012097475 50 Smo96442 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.NSP1-NSP2 nodulation initiation complex.NSP2 component 0.8798836671768446 51 Smo170624 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132 0.8790667256394921 52 Smo97883 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A1 activities.PC-PLA1-type phospholipase A1 0.8778299566102346 53 Smo437924 Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica DFL2, GH3-10 0.8774463196305083 54 Smo232430 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226 0.8768850103150049 55 Smo78847 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.875649815319948 56 Smo155359 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS 0.8753567866532339 57 Smo233481 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor ATRAB8D, ATRABE1B, RABE1b 0.8749465569234512 58 Smo404832 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component PTAC5 0.8748128549304286 59 Smo90782 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana 0.8742518349099879 60 Smo177791 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.8741145237982831 61 Smo126152 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana 0.8739624472327712 62 Smo75631 Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana 0.8732249411934824 63 Smo161978 Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana 0.8732154666676591 64 Smo62145 Solute transport.carrier-mediated transport.MFS superfamily.FPN iron-regulated metal cation transporter 0.8731360133835915 65 Smo51301 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA3, KEA3 0.8724943899757465 78 Smo31438 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.872464800928427 67 Smo82002 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF152 transcript stability factor CRM3, HCF152 0.8723876477716427 68 Smo228964 Amino acid metabolism.biosynthesis.aspartate family.asparagine.asparagine aminotransaminase AGT1, SGAT, AGT 0.8709472232122091 69 Smo14478 0.8696871049869785 70 Smo115078 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1 0.8696539973419465 71 Smo230748 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.pyruvate orthophosphate dikinase PPDK 0.8693184840858379 72 Smo411080 Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana 0.8671175447172721 73 Smo92189 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase 0.8665311268827713 74 Smo426174 0.8659961708761846 75 Smo446318 Protein OPAQUE10 OS=Zea mays 0.8651700007715667 76 Smo67708 Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.8650681742823175 77 Smo418548 Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 OS=Arabidopsis thaliana 0.863992566694166 78 Smo75562 0.8639474070850319 79 Smo144881 UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa 0.8623075856311218 81 Smo99338 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase SBPASE 0.8621909561308229 81 Smo270710 Photosynthesis.calvin cycle.NADPH-dependent malate dehydrogenase 0.8618410232158075 82 Smo96850 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 0.8609358993456157 83 Smo97903 Photosynthesis.photorespiration.glycerate kinase 0.8608337122694365 84 Smo93338 Solute transport.carrier-mediated transport.APC superfamily.HAAAP-type aromatic amino acid transporter 0.8605805654584402 85 Smo267533 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase 0.8592348472182081 86 Smo145611 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGT2, AOAT2 0.8586143497921487 87 Smo83230 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease 0.8573018666146038 88 Smo85667 Solute transport.carrier-mediated transport.PLGG1 glycerate:glycolate transporter 0.8572110549095637 89 Smo270508 0.856321663457391 90 Smo170086 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8555122178397665 91 Smo442777 RNA-binding protein BRN1 OS=Arabidopsis thaliana RBP-DR1, AtRBP-DR1 0.8545071076857775 92 Smo93539 Solute transport.carrier-mediated transport.APC superfamily.NCS-1 family.nucleobase cation transporter (PLUTO-type) 0.8531773141907917 93 Smo417692 0.8531453528238382 94 Smo73641 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana EMB2758 0.8527127618985265 95 Smo270406 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase 0.8526779421488491 96 Smo173368 Solute transport.carrier-mediated transport.APC superfamily.NRAMP metal cation transporter NRAMP6, ATNRAMP6 0.8521360404428162 97 Smo438522 0.8506271035467955 98 Smo107618 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.8503899480245419 99 Smo130316 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52 0.8501677565112317 100