Sequence Description Alias PCC hrr Smo409004 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.9367973858307764 3 Smo412574 RAP domain-containing protein, chloroplastic OS=Arabidopsis thaliana ATRAP, RAP 0.9313925191731273 2 Smo76814 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic56 component 0.9309961877104559 3 Smo175555 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase HUB2 0.9302785229308518 16 Smo91982 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease 0.9298424191937031 7 Smo442211 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761 0.9199050152422907 25 Smo428406 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.EME1 component ATEME1B, EME1B 0.9141717314259681 17 Smo89990 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana 0.9126381629540229 18 Smo131582 Actin-related protein 5 OS=Arabidopsis thaliana ARP5, ATARP5 0.9116786369914924 15 Smo181800 0.9114160018464922 26 Smo446942 Protein EMSY-LIKE 3 OS=Arabidopsis thaliana 0.9113162068304343 26 Smo91298 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VII/NDR kinase 0.9112666752570185 12 Smo79402 0.9070840041890829 13 Smo175826 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana 0.9070610592315039 14 Smo106157 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana 0.9068175996116441 15 Smo437796 0.9061643458753212 16 Smo166436 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana EX1 0.9056597166930487 17 Smo402861 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component TAF2 0.9035737849064602 57 Smo439163 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1 0.9020025114246455 19 Smo437404 0.9019681987065352 20 Smo413675 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana 0.9011985780374943 21 Smo165421 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase 0.9003914869014018 22 Smo271353 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase QPT 0.8998179156284022 23 Smo20706 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays EMB1865 0.8994490356691177 27 Smo440203 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Iswi chromatin remodeling factor CHR11 0.8967139582953833 32 Smo437336 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana 0.8965536576773421 41 Smo416934 Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana 0.8963055706840551 27 Smo154280 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase OVA1 0.8960242180013777 34 Smo402481 EMB140 0.895951273679392 43 Smo82731 0.8959412476423585 41 Smo75698 GTPase ERA1, chloroplastic OS=Zea mays 0.8954475873446015 38 Smo412577 RAP domain-containing protein, chloroplastic OS=Arabidopsis thaliana ATRAP, RAP 0.8951362903532021 32 Smo118724 0.8949723032541765 33 Smo438037 0.8947748777985142 45 Smo438142 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2 0.8938925599959666 35 Smo442872 0.8930847014471748 36 Smo60327 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.SMC6 component ATRAD18, SMC6B, MIM 0.8912502511457859 38 Smo438416 0.8911475466679716 39 Smo11301 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica 0.8904320181692768 40 Smo437710 0.8902094133863232 91 Smo413123 RAP domain-containing protein, chloroplastic OS=Oryza sativa subsp. japonica ATRAP, RAP 0.8899465604948401 42 Smo164801 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE 0.8887969118866565 43 Smo414202 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2 0.8884158685502025 44 Smo150191 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana ATRDRP1, RDR1 0.8873190517685166 45 Smo404377 Protein TPR3 OS=Oryza sativa subsp. japonica TPR1 0.8858712707662836 46 Smo441624 Aldo-keto reductase family 4 member C10 OS=Arabidopsis thaliana 0.8858288201710663 47 Smo445517 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2 0.8858046922751536 48 Smo105247 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.8845489468442768 49 Smo148635 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component MURE, PDE316, ATMURE 0.882214209641225 50 Smo437462 MND1-interacting protein 1 OS=Arabidopsis thaliana 0.88184323695631 51 Smo115678 Protein translocation.peroxisome.importomer translocation system.receptor export system.Pex1-Pex6 subcomplex.Pex1 component PEX1 0.88048893454298 81 Smo403579 0.880437394431332 53 Smo406091 RNA biosynthesis.transcriptional activation.TIFY transcription factor TIFY4A, PPD1 0.8800850696625572 54 Smo231207 Laccase-13 OS=Oryza sativa subsp. japonica LAC11 0.8798314760386148 55 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.8797018748481799 57 Smo410333 0.8796905134985858 57 Smo73985 RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana 0.8795831188032078 58 Smo410877 SPD1 0.8793007535152263 59 Smo437225 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.8790194952714494 74 Smo140340 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase 0.8784700067702382 61 Smo442673 Nutrient uptake.iron uptake.iron storage.PIC-type iron transporter 0.8780125834756586 62 Smo73828 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana 0.8772857519685178 64 Smo109207 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase TOP1BETA, TOP1 0.8772296223075936 65 Smo79851 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2 0.8758428526158908 66 Smo440582 ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana SRS2, ATSRS2 0.8757083885364749 74 Smo404623 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.8756370790135278 68 Smo92242 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor 0.8752088908100746 69 Smo98591 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana 0.874638841783141 71 Smo437976 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor 0.8740939878526339 99 Smo415389 0.8739610408178189 80 Smo166434 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana EMB1270 0.8739382184228749 74 Smo120007 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.8738058106045518 75 Smo105976 0.8730994100724078 87 Smo440019 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VI kinase families.LRR-VI-1 kinase ISE2, PDE317, EMB25 0.8724092252648901 77 Smo81276 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 0.8722110842238393 78 Smo148310 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component CLP2, CLPR2, NCLPP2 0.8714256907177553 79 Smo186974 tRNA ligase 1 OS=Arabidopsis thaliana ATRNL, AtRLG1, RNL 0.8706482185904324 88 Smo429547 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Ris1 chromatin remodeling factor 0.8703530853281127 82 Smo439455 0.8701814346302109 83 Smo180624 Protein translocation.chloroplast.inner envelope Sec2 post-import insertion system.SecY2 component SCY2, EMB2289 0.8699554652910326 84 Smo87307 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins 0.8699380442051384 85 Smo139232 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.lysine N-methyltransferase 0.8697670000504478 86 Smo429326 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14 0.868944010623257 88 Smo26412 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana 0.8681295962269757 89 Smo444750 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component 0.867434292961572 90 Smo270556 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana 0.8674138464262873 91 Smo430784 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.867041648000993 92 Smo440740 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase 0.8661840938457028 93 Smo424522 0.8650460290839538 94 Smo402586 0.8649131500363315 95 Smo85469 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) TAPX 0.8648640193338522 96 Smo75780 DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana 0.8640731070450618 98 Smo166773 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana EMB2083 0.8636121248274207 99