Sequence Description Alias PCC hrr Smo164801 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE 0.9617569362761995 1 Smo438805 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component PTAC10, PDE312 0.9494189144218944 2 Smo78010 Protein modification.protein folding and quality control.protein folding catalyst activities.TF nascent polypeptide chaperone 0.9445122428984575 3 Smo89990 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana 0.9386606765450972 4 Smo81522 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component FTSH12, EMB36, EMB156, EMB1047 0.9330660751472379 8 Smo11301 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica 0.9288480729809879 6 Smo75698 GTPase ERA1, chloroplastic OS=Zea mays 0.9273597560497165 8 Smo120007 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.9226713806676935 8 Smo60327 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.SMC6 component ATRAD18, SMC6B, MIM 0.9220443837472874 9 Smo73828 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana 0.920600796186807 10 Smo410877 SPD1 0.9169133435763563 11 Smo442673 Nutrient uptake.iron uptake.iron storage.PIC-type iron transporter 0.916661928025694 12 Smo231207 Laccase-13 OS=Oryza sativa subsp. japonica LAC11 0.9143561965400268 13 Smo145357 RNA processing.organelle machineries.ribonuclease activities.RNase R exoribonuclease RNR1, ATMTRNASEII, EMB2730 0.9136417772754695 14 Smo405767 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana FTSH12, EMB36, EMB156, EMB1047 0.9133144487476607 15 Smo186974 tRNA ligase 1 OS=Arabidopsis thaliana ATRNL, AtRLG1, RNL 0.9123065132524592 25 Smo20706 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays EMB1865 0.9108175126533008 17 Smo93752 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein PTAC4, VIPP1 0.9086755048004652 18 Smo83448 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor 0.9079714273238415 19 Smo442087 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor 0.9076961357513398 20 Smo153292 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component 0.9051516895408024 21 Smo409004 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.9050733812985776 22 Smo94171 Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase OVA6, PRORS1 0.9047367937786429 23 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.9045615094142787 24 Smo403724 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.9028906143972283 25 Smo428281 0.9021869810773747 26 Smo85220 0.9005571431657919 27 Smo271353 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase QPT 0.9005282366320179 28 Smo91982 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease 0.9002907104372415 30 Smo77541 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana 0.9001660271174247 30 Smo117159 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1 0.8993201262508326 31 Smo92242 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor 0.8985567620948643 32 Smo85469 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) TAPX 0.8972712891911074 33 Smo439642 0.8960242180013777 34 Smo79851 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase OVA5, ATKRS-2 0.8935231652524778 35 Smo73985 RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana 0.8931924651281374 36 Smo445517 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2 0.8930037088806042 37 Smo91321 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 0.8928258728050787 38 Smo146755 0.892342269045244 39 Smo81276 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component 0.8920815242888047 40 Smo100125 Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana 0.8917287840031897 41 Smo132374 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.8914011104227615 42 Smo102611 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease 0.890766850634373 43 Smo122255 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase ATHRS1, HRS1 0.8904458504910551 44 Smo172681 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase ERS, OVA3, ATERS 0.890437523067894 45 Smo156007 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1 0.8900466046168632 46 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.8888851971996936 47 Smo47998 Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana 0.8875238279511766 48 Smo42776 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.AAAP-type transporter 0.8867444154532467 49 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.8862727644254166 50 Smo168153 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein CPN60B, LEN1 0.8859327611390417 51 Smo166773 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana EMB2083 0.8855078075590278 52 Smo142036 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana 0.8848492562514575 53 Smo36105 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana 0.884818544212287 54 Smo118724 0.8842182690352617 55 Smo110531 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana PDE247, CLB19 0.8840495666274834 56 Smo74924 0.881525656122452 58 Smo440741 0.8795435006655077 59 Smo410009 0.8793099883616572 60 Smo26412 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana 0.8791650501445661 61 Smo166436 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana EX1 0.8786349773730406 62 Smo47118 0.8769974084780114 63 Smo148310 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component CLP2, CLPR2, NCLPP2 0.8769483729810902 64 Smo82310 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP POLGAMMA2 0.875512570553508 65 Smo88014 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase 0.8749697383001007 66 Smo92083 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana 0.874446209117564 67 Smo437721 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component TIC40, ATTIC40, PDE120 0.8733775597316001 68 Smo402209 0.8733324381207357 69 Smo443419 0.8732471226496409 70 Smo121150 0.8718431013702845 71 Smo90520 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PYG7 protein 0.8716895967253685 72 Smo107490 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana LOI1, MEF11 0.8709087800751751 73 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8708787474402693 74 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.8706533026823313 75 Smo437676 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase OVA2 0.8697886990704369 76 Smo444750 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component 0.8695339666672606 77 Smo98591 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana 0.8693137107278834 78 Smo424522 0.8691911844447511 79 Smo76814 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic56 component 0.8690409789680035 100 Smo101516 0.8682904426425866 81 Smo405512 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component 0.8677849020542925 82 Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.8667537312156891 83 Smo439181 0.8665348978353252 84 Smo417577 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase G6PD2 0.8654835198845875 85 Smo405769 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana 0.8650678808959544 86 Smo415636 0.8643949292990607 90 Smo423505 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor 0.8642237157062345 88 Smo152047 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome ATPREP1, PREP1, ATZNMP 0.862903960509554 89 Smo146971 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1 0.8622566053280185 90 Smo64370 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor 0.8621571526710177 91 Smo437929 0.8613902464254544 92 Smo119009 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase SYCO ARATH 0.8610536955948096 97 Smo91663 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana 0.8605349209634644 94 Smo30615 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.8595206896312709 95 Smo403990 0.858574484455866 96 Smo93050 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana emb2004 0.8585410370102603 97 Smo106218 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme 0.8576676603392408 100 Smo430784 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component MAR1, TOC75-III 0.8569286720830751 99 Smo79664 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8567215385792573 100