Sequence Description Alias PCC hrr Smo174616 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component V157, PDE166, ALB1, CHLD, ALB-1V 0.9249337156410637 5 Smo404832 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component PTAC5 0.9221886538717723 8 Smo117112 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor APE1 0.9188409543904925 4 Smo429956 0.9174956956547281 8 Smo97903 Photosynthesis.photorespiration.glycerate kinase 0.9158264261462125 5 Smo174737 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana 0.9104397933362934 8 Smo423707 0.9103625297364033 32 Smo74261 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum PDS3, PDS, PDE226 0.9061730249670414 36 Smo143134 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component 0.9052348052243953 22 Smo437487 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase 0.9030870349916689 10 Smo144149 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana 0.9020901367368405 11 Smo440512 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamyl-tRNA-dependent amidotransferase complex.GatA component 0.9018352255696878 12 Smo25109 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase 0.9003976192521004 13 Smo96317 Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana 0.900243932749619 14 Smo229587 Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar 0.8963917543539736 15 Smo85247 Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana PHR2 0.8963305757116984 16 Smo92189 Protein biosynthesis.aminoacyl-tRNA synthetase activities.tryptophan-tRNA ligase 0.8957363773283114 17 Smo130316 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52 0.8946323868311581 18 Smo174833 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase HCEF1 0.894401253685976 20 Smo448162 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana 0.893962592476963 32 Smo98333 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor 0.8930735862007586 21 Smo90536 Protein modification.S-glutathionylation and deglutathionylation.glutathione S-transferase activities.class lambda 0.8893993943087416 48 Smo55147 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase 0.8886518999146149 28 Smo271018 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1 0.8831831998779468 37 Smo271184 0.8830454378556145 25 Smo227615 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.8822224803079803 45 Smo99338 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase SBPASE 0.881271191209458 27 Smo185868 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A 0.8807056388277419 28 Smo104804 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component 0.8806530479404463 29 Smo271457 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase GAPB 0.8796405935497432 38 Smo228849 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B 0.8787363408907989 32 Smo75269 Uncharacterized protein At1g26090, chloroplastic OS=Arabidopsis thaliana 0.8757220206053178 32 Smo169254 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana MRL1 0.8742532133302863 52 Smo270723 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component CPSRP43, CAO 0.8740611374358334 34 Smo91144 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101 0.8734017009056113 56 Smo164683 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen deaminase HEMC 0.8721722742037038 36 Smo403333 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana LHCA5 0.8719908109266941 37 Smo83230 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease 0.8719469239010514 38 Smo235693 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.8711212550569671 87 Smo63559 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana 0.8710567541946085 76 Smo85565 0.8694725791857802 41 Smo170069 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase ECHID, DHNS 0.8689687603710371 42 Smo103361 0.8685434228519947 51 Smo272095 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component 0.8677339291281607 44 Smo60716 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726 0.865636999190928 80 Smo127459 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein TLP18.3 0.8647730121315359 46 Smo93150 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8 0.8644609630614019 49 Smo64169 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component 0.8637867470850424 55 Smo270732 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component RPL9 0.8637708701511151 49 Smo173339 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein ATSULA, GC1, SULA 0.8624622498051545 88 Smo420519 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) 2CPB, 2-Cys Prx B 0.8619966683631265 51 Smo233658 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PSY phytoene synthase PSY 0.8618705191846813 52 Smo423983 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG CHLG, G4, ATG4 0.8616962584556653 66 Smo448328 Photosynthesis.photophosphorylation.pseudo-cyclic electron flow.flavodiiron protein 0.8610965498552298 96 Smo133157 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A 0.8602475023730906 55 Smo75294 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 crr1 0.8579855250859727 56 Smo438082 Protein degradation.peptidase families.serine-type peptidase activities.Rhomboid protease 0.8572625725564799 57 Smo134339 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC23 component PsbP OE23, OEE2, PSBP-1, PSII-P 0.8571045333987307 58 Smo230291 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL24 component 0.8570565297561449 59 Smo106498 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP3 protein LIL3:1 0.85663488950564 60 Smo413620 0.8556666258497371 61 Smo411048 0.8549471189217648 62 Smo438672 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase HEME2 0.8542468369282615 63 Smo78847 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.8540594441995905 64 Smo413416 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana FZL 0.8535819883289301 65 Smo183274 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.8522628499108154 67 Smo230423 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-I component CHL I2, CHLI2, CHLI-2 0.8506038263038581 67 Smo64109 0.850299422253763 68 Smo177574 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL15 component RPL15 0.850266531904035 69 Smo81134 0.8498713681808512 70 Smo441569 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL 0.8497150347603563 71 Smo439518 Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana 0.8474334994302678 73 Smo81106 0.8466370923104495 74 Smo413851 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst ATCYP38, CYP38 0.8463370957973417 76 Smo61985 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor HCF107 0.8452221014725216 90 Smo444102 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component 0.8452115632216668 78 Smo270406 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase 0.844482782706557 80 Smo437924 Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica DFL2, GH3-10 0.8443542629252286 81 Smo147927 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit 0.8438494758361945 82 Smo417198 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.CIN phosphatase PGLP1, ATPGLP1 0.8434046397456305 83 Smo443172 Fruit protein pKIWI502 OS=Actinidia deliciosa 0.8432027127012194 84 Smo449377 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2 0.8418332396979679 85 Smo418548 Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 OS=Arabidopsis thaliana 0.8416134643382192 86 Smo63596 Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana 0.8414684033993767 87 Smo446143 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.840098360058506 88 Smo272235 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO OEC33, PSBO-2, PSBO2 0.8396471383304264 89 Smo141857 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor APG3 0.8379185519338648 90 Smo93920 Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.peroxisomal citrate synthase CSY3 0.8376810416062677 91 Smo410681 UDP-glycosyltransferase 85A7 OS=Arabidopsis thaliana AtUGT85A7, UGT85A7 0.8376610893020264 92 Smo176403 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase ATLIP1, LIP1 0.836537077779547 93 Smo439533 0.8353251475130727 94 Smo233481 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor ATRAB8D, ATRABE1B, RABE1b 0.8351031809821629 95 Smo98780 Monooxygenase 2 OS=Arabidopsis thaliana CTF2A 0.8344438391862609 96 Smo432611 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease 0.8336379792586295 97 Smo177791 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.8330896522306909 98 Smo443338 0.8309982747020429 100