Sequence Description Alias PCC hrr MA_10181415g0010 no hits & (original description: none) 0.9757476365196667 2 MA_116156g0010 no hits & (original description: none) 0.9741456066655578 2 MA_10437027g0010 ABC transporter F family member 5 OS=Arabidopsis thaliana (sp|q9lv93|ab5f_arath : 735.0) ATGCN5, GCN5 0.9710354306240401 8 MA_742675g0010 No annotation 0.9642921337811236 16 MA_10433730g0010 chlorophyll dephytylase (CLD) 0.9641047866254305 18 MA_122602g0010 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana (sp|q0wlc6|pp349_arath : 162.0) MRL1 0.9621282795513494 7 MA_10437193g0010 Probable zinc metalloprotease EGY1, chloroplastic OS=Arabidopsis thaliana (sp|q949y5|egy1_arath : 352.0) EGY1 0.960747464676672 27 MA_298732g0010 Stromal processing peptidase, chloroplastic OS=Arabidopsis thaliana (sp|q9fih8|spp_arath : 322.0) 0.9603567772888866 10 MA_98203g0010 No annotation 0.9602294176671137 30 MA_21385g0010 no hits & (original description: none) HCF173 0.9593099078185433 10 MA_10428389g0010 photosynthetic acclimation STN8 kinase. protein kinase (STN) STN8 0.9585144397361421 25 MA_10436972g0010 no hits & (original description: none) 0.9583892385829588 12 MA_10282308g0010 alanine-tRNA ligase EMB86, EMB1030, EMB263 0.9580298972025397 13 MA_710226g0010 no hits & (original description: none) 0.9579251456268855 14 MA_8499291g0010 WAT1-related protein At3g02690, chloroplastic OS=Arabidopsis thaliana (sp|q93v85|wtr16_arath : 149.0) 0.9577388173968481 15 MA_8445490g0010 Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic OS=Arabidopsis thaliana (sp|b9dgy1|ab1k7_arath : 117.0) 0.9573885020362148 20 MA_8117g0010 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum (sp|p31542|clpab_sollc : 604.0) HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1 0.9573365327243935 52 MA_10433694g0010 2-methylene-furan-3-one reductase OS=Solanum lycopersicum (sp|k4bw79|enox_sollc : 449.0) & Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor(50.1.3 : 43.1) 0.9569830526855618 44 MA_952592g0010 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana (sp|q9sxj6|clpp3_arath : 100.0) CLPP3, NCLPP3 0.9569469635298204 27 MA_407396g0010 Stromal processing peptidase, chloroplastic OS=Arabidopsis thaliana (sp|q9fih8|spp_arath : 303.0) 0.9568775951644076 20 MA_9585721g0010 no hits & (original description: none) 0.9568277540631293 30 MA_174635g0010 no hits & (original description: none) 0.9560210820337431 45 MA_10433383g0010 protein kinase (ABC1) 0.955181823998921 23 MA_8868156g0010 RAP domain-containing protein, chloroplastic OS=Arabidopsis thaliana (sp|q8vze7|rap_arath : 254.0) ATRAP, RAP 0.9548893538000486 24 MA_596288g0010 Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica (sp|q7f9i1|clpc1_orysj : 435.0) HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1 0.9543748825978959 59 MA_10430415g0010 no hits & (original description: none) 0.9543477647806343 35 MA_138810g0010 Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana (sp|f4k410|svr3_arath : 653.0) 0.9538865288028973 31 MA_4340g0010 IF-2 translation initiation factor FUG1 0.9538435442920093 50 MA_1160713g0010 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum (sp|p31542|clpab_sollc : 174.0) HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1 0.9523330832046258 39 MA_10434075g0010 component psPSRP2 of small ribosomal subunit proteome CP31B 0.9520811893710416 63 MA_10427944g0010 no hits & (original description: none) SPD1 0.9519609283393682 31 MA_8784390g0010 no hits & (original description: none) 0.9519069147646373 40 MA_10436405g0010 no hits & (original description: none) 0.9518804176175167 34 MA_502125g0010 targeting peptid degrading peptidase (PreP) ATPREP2, PREP2 0.9516612656221144 46 MA_20503g0010 no hits & (original description: none) PTAC17 0.9507588307953995 35 MA_10366066g0010 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana (sp|q9ljl3|prep1_arath : 136.0) ATPREP1, PREP1, ATZNMP 0.9501802311946321 44 MA_10437115g0010 solute transporter (UmamiT) 0.9498352404028807 37 MA_7675554g0010 pyrimidine reductase PHS1 0.94977562833725 48 MA_159916g0010 proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex CLPP3, NCLPP3 0.9497331663206348 39 MA_164820g0010 proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex CLPP3, NCLPP3 0.9497331663206348 40 MA_10430139g0010 Peptide methionine sulfoxide reductase A4, chloroplastic OS=Arabidopsis thaliana (sp|p54150|msra4_arath : 295.0) & Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor(50.1.8 : 247.8) PMSR4 0.9492099972586421 41 MA_10435372g0010 phosphate transporter (PHT4) ANTR1, PHT4;1 0.9487873063693236 86 MA_12095g0010 stromal processing peptidase (SPP) 0.948536046085336 43 MA_1117052g0010 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana (sp|f4ivl6|grv2_arath : 554.0) GRV2, KAM2 0.9484225366813349 44 MA_10426639g0010 protease (Deg) DEGP1, Deg1 0.9483589145785519 45 MA_10435664g0010 no description available(sp|q8ry11|ampp2_arath : 295.0) & Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase)(50.3.4 : 208.1) 0.9482003707390443 46 MA_12302g0010 no hits & (original description: none) 0.9475421411742179 47 MA_10431582g0010 no hits & (original description: none) 0.9473474181645006 48 MA_37826g0010 no hits & (original description: none) 0.9473399406539241 49 MA_9453036g0010 No annotation 0.9472546898091726 50 MA_10436666g0010 Histidine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana (sp|o82413|syhm_arath : 221.0) 0.9472113093122837 51 MA_334187g0010 no hits & (original description: none) 0.9469407472293487 52 MA_10038446g0010 No annotation 0.9463718246819864 53 MA_69306g0030 no hits & (original description: none) 0.9463343901499968 54 MA_72886g0010 Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana (sp|q9fk33|pp427_arath : 603.0) 0.9456427478536626 92 MA_190300g0010 ATPase ARSA1 OS=Chlamydomonas reinhardtii (sp|a8jgb0|asna1_chlre : 132.0) & Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase acting on acid anhydride(50.3.6 : 81.0) 0.9456418884946439 56 MA_10436789g0010 no hits & (original description: none) 0.9454077374575524 57 MA_10280391g0010 no hits & (original description: none) 0.9449925058439271 59 MA_10436489g0010 ribonuclease (RNC1) 0.9449861845034633 60 MA_9569g0010 no hits & (original description: none) RFC3 0.9446409192094215 76 MA_10435618g0010 zeaxanthin epoxidase. zeaxanthin epoxidase (ZEP). zeaxanthin epoxidase (ABA1) ABA1, IBS3, ATABA1, ZEP, NPQ2, LOS6, ATZEP 0.9443163278288298 62 MA_124140g0010 no hits & (original description: none) 0.9442613088409497 63 MA_283144g0010 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana (sp|q9ls25|pp420_arath : 656.0) 0.9435978728187621 64 MA_10436783g0020 component cpTatC of thylakoid membrane Tat translocation system PGA2, APG2, TATC, UNE3 0.9428169627489175 86 MA_892340g0010 no hits & (original description: none) 0.9426820413423777 66 MA_942991g0010 EF-Tu translation elongation factor ATRAB8D, ATRABE1B, RABE1b 0.9426456994961031 67 MA_10432388g0010 LTO1 protein involved in PS-II assembly. thiol-disulfide oxidoreductase (LTO1) 0.9426064436367548 68 MA_69152g0010 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 227.0) MEE40 0.9423922024884874 69 MA_10433821g0010 component cpFtsY of thylakoid membrane SRP insertion system FRD4, CPFTSY 0.9423688559845295 70 MA_188257g0010 no hits & (original description: none) 0.9423629495772704 80 MA_587689g0010 RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis (sp|p08824|ruba_ricco : 352.0) CH-CPN60A, CPN60A, SLP 0.9420595589632518 72 MA_657535g0010 RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum (sp|p08926|ruba_pea : 314.0) CH-CPN60A, CPN60A, SLP 0.9408990362309166 74 MA_906445g0010 No annotation 0.9406896340952386 75 MA_34924g0010 transcription factor (Trihelix). atypical dual-specificity phosphatase (PFA-DSP) 0.9406754550804407 76 MA_5176g0010 myo-inositol-1-phosphate synthase MIPS2, ATMIPS2, ATIPS2 0.9406222137609911 80 MA_10431651g0010 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR 0.9404428621288068 78 MA_210464g0010 No annotation 0.9404049972093541 79 MA_10050138g0010 protein-only ribonuclease (RNase P) PRORP1 0.939820807869004 80 MA_10436278g0010 no hits & (original description: none) 0.9393261207384997 95 MA_10434422g0010 scaffold protein NFU of plastidial SUF system transfer phase AtCNFU1, NFU1 0.938421474628772 82 MA_10435660g0010 no hits & (original description: none) 0.9383843116591237 83 MA_10437262g0010 phosphate transporter (PHT4) ANTR2, PHT4;4 0.9381764041110073 84 MA_260111g0010 No annotation 0.9375992911517188 85 MA_10435649g0010 Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana (sp|q94bu1|y1181_arath : 110.0) 0.9373814298967208 86 MA_94165g0010 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 635.0) CRR22 0.9373060436537537 87 MA_171750g0010 no hits & (original description: none) emb1703 0.9370922359129056 88 MA_961483g0010 no hits & (original description: none) emb1990, ATYLMG1-1, YLMG1-1 0.937040983290777 90 MA_10432072g0010 CFM2-type plastidial RNA splicing factor ATCFM3A, CFM3A 0.9364657357916889 91 MA_10432633g0010 no hits & (original description: none) ATRAP, RAP 0.9357401508439899 93 MA_10437148g0010 catalase CAT2 0.9349089463442868 96 MA_92274g0010 Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana (sp|q9sh26|pp102_arath : 249.0) 0.9345859901442805 97 MA_453303g0010 no hits & (original description: none) 0.9344987681193245 98 MA_10432146g0010 nucleotide exchange factor (CGE) EMB1241 0.9341693770663669 100