Sequence Description Alias PCC hrr Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.892707949684 1 Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 0.876873869192 2 Cre13.g562850 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb29 protein PSB29, THF1 0.841802515637 4 Cre03.g144184 0.816366840047 8 Cre04.g215050 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid beta ring hydroxylase BETA-OHASE 1, chy1, B1, BCH1 0.805189190705 5 Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.804743560172 12 Cre16.g690350 0.788627300752 7 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component PGR5 0.786582968519 8 Cre08.g358540 0.78084662034 9 Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana ATNAP9, NAP9 0.778734852895 16 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 0.776398852791 13 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.774242301166 12 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 0.773548118414 13 Cre14.g610850 0.764517265465 14 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA 0.76381754558 15 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.75437271805 16 Cre08.g358538 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC 0.741880742593 17 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) G-TMT, VTE4, TMT1 0.740605414183 23 Cre04.g225050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component 0.735346929001 19 Cre07.g320450 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP, ELIP1 0.728306619677 20 Cre13.g578650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.724400880073 57 Cre06.g273700 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.721274827922 25 Cre13.g571560 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component DET1, ATDET1, FUS2 0.717435792618 23 Cre02.g078939 Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri CRY3 0.713308023514 27 Cre03.g145567 0.708359481139 25 Cre03.g144164 Protein modification.peptide maturation.plastid.AraSP plastidial inner envelope protease ARASP 0.702563137555 28 Cre06.g310500 External stimuli response.light.UV-B light.UV-B signal transduction transcriptional regulator HYH 0.702182519731 27 Cre01.g055151 0.696954840997 30 Cre10.g440450 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28 0.69434532804 34 Cre05.g246552 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.68565834136 55 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 0.68396389004 32 Cre09.g395650 0.680264387464 33 Cre12.g519300 0.678033967077 54 Cre03.g167051 Coenzyme metabolism.pyridoxalphosphate synthesis.pyridoxal 5-phosphate synthase complex.glutaminase component EMB2407, ATPDX2, PDX2 0.675603622558 86 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 0.675136205751 36 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase FAD4, FADA 0.673054579058 37 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP2 0.666188930391 83 Cre07.g315150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.RBD1 protein 0.663128337808 39 Cre06.g274650 0.6625385051 61 Cre01.g053850 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana SPA2 0.656538388828 50 Cre01.g016750 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).PsbS-dependent machinery.PsbS protein NPQ4, PSBS 0.65485942442 42 Cre02.g109950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein 0.645321692197 43 Cre08.g360801 0.64229429235 44 Cre08.g360850 0.635729561872 45 Cre02.g086850 0.63444345577 70 Cre03.g181400 Coenzyme metabolism.tetrahydrofolate synthesis.p-aminobenzoate synthesis.aminodeoxychorismate synthase emb1997, ADCS 0.633299454892 74 Cre01.g016150 0.632782907097 57 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 0.624545129348 51 Cre02.g110300 0.622105881768 52 Cre08.g380000 0.613423001888 54 Cre08.g379550 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR1, PHT4;1 0.613415725604 66 Cre06.g281250 0.611960843654 57 Cre03.g205900 Polyamine metabolism.spermidine/spermine.synthesis.S-adenosyl methionine decarboxylase SAMDC 0.607401047727 58 Cre03.g145587 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana 0.600311184082 60 Cre03.g206929 Protein modification.peptide maturation.plastid.EGY protease EGY1 0.597428540167 81 Cre08.g365900 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LhcSR-dependent machinery.LhcSR protein LHCA2 0.597306920446 63 Cre12.g558550 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.596015857635 99 Cre04.g221550 0.595729314396 66 Cre06.g290350 0.586959327127 76 Cre07.g320400 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP, ELIP1 0.586534712431 72 Cre16.g686400 0.578885380262 75 Cre06.g278167 0.568030133379 83 Cre09.g394325 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP2 0.567964446368 80 Cre06.g251150 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein OHP2 0.5633293659 85 Cre09.g397250 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta-7/delta-9 fatty acid desaturase ADS3, FAD5, JB67, FADB 0.5605468786 88 Cre03.g197750 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase PHGPX, GPX6, ATGPX6, LSC803 0.546045370334 95