Sequence Description Alias PCC hrr Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana ATNAP9, NAP9 0.89146266065 5 Cre03.g144184 0.889681111615 4 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.880315551465 5 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 0.873576316593 4 Cre07.g320450 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP, ELIP1 0.837791264728 6 Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.819997531329 9 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) G-TMT, VTE4, TMT1 0.812341987406 7 Cre01.g016750 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).PsbS-dependent machinery.PsbS protein NPQ4, PSBS 0.810440716816 8 Cre02.g078939 Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri CRY3 0.790881868752 9 Cre06.g310500 External stimuli response.light.UV-B light.UV-B signal transduction transcriptional regulator HYH 0.787507424638 10 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA 0.778775734545 11 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP2 0.775539798298 12 Cre12.g485800 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH1 0.773548118414 13 Cre09.g394325 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP2 0.770151328449 14 Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 0.764695174831 16 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component PGR5 0.754583300396 16 Cre14.g610850 0.751863071538 17 Cre13.g571560 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component DET1, ATDET1, FUS2 0.751612827548 18 Cre04.g215050 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid beta ring hydroxylase BETA-OHASE 1, chy1, B1, BCH1 0.749452833282 19 Cre03.g145567 0.737811429424 20 Cre06.g283750 Coenzyme metabolism.prenylquinone synthesis.plastoquinone synthesis.HST homogentisate solanesyltransferase HST, ATHST, PDS2 0.737503093817 62 Cre03.g167051 Coenzyme metabolism.pyridoxalphosphate synthesis.pyridoxal 5-phosphate synthase complex.glutaminase component EMB2407, ATPDX2, PDX2 0.725708029909 37 Cre07.g320400 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP, ELIP1 0.724700359629 23 Cre13.g562850 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb29 protein PSB29, THF1 0.717948389529 30 Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.717056828783 26 Cre08.g365900 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LhcSR-dependent machinery.LhcSR protein LHCA2 0.710649991571 26 Cre08.g358540 0.707913143581 27 Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 0.705542628697 41 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.701948781594 33 Cre06.g281250 0.696634371929 30 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase FAD4, FADA 0.691392816332 31 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 0.686064350686 32 Cre01.g016150 0.684710274979 33 Cre01.g055151 0.68444290362 39 Cre03.g145587 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana 0.683933213198 35 Cre08.g360850 0.682952883232 36 Cre05.g246552 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.675663809594 61 Cre16.g690350 0.672229796143 41 Cre01.g053850 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana SPA2 0.671498249402 39 Cre03.g181400 Coenzyme metabolism.tetrahydrofolate synthesis.p-aminobenzoate synthesis.aminodeoxychorismate synthase emb1997, ADCS 0.662392856685 40 Cre16.g686400 0.661011177346 41 Cre12.g519300 0.659987980115 71 Cre07.g315150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.RBD1 protein 0.651318309414 43 Cre06.g274650 0.650062717044 71 Cre04.g225050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component 0.647256476617 45 Cre09.g395650 0.645624672375 46 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 0.641755983198 59 Cre12.g558550 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.637818501433 67 Cre08.g358538 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC 0.626839227058 85 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 0.621657792999 52 Cre14.g626750 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP, ELIP1 0.617485938069 54 Cre08.g360801 0.614701808491 59 Cre08.g380000 0.604137755568 61 Cre06.g251150 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein OHP2 0.604082878158 62 Cre08.g379550 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR1, PHT4;1 0.602595644094 78 Cre09.g407200 Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.601925673736 80 Cre02.g109950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein 0.599248976591 69 Cre02.g110300 0.579671923703 69 Cre10.g461900 Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana 0.578071749856 70 Cre03.g197750 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase PHGPX, GPX6, ATGPX6, LSC803 0.577498102254 71 Cre04.g221550 0.573474434894 93 Cre12.g492650 0.567716749488 74 Cre06.g263550 0.558776622683 78 Cre13.g571580 0.539889909589 88