Sequence Description Alias PCC hrr Cre16.g686350 0.8372185076 2 Cre14.g610850 0.822436886743 3 Cre16.g686400 0.810929844606 3 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 0.790881868752 9 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) G-TMT, VTE4, TMT1 0.787757750689 9 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 0.77758139582 6 Cre03.g145587 Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana 0.774897464476 7 Cre08.g358540 0.773007897788 12 Cre02.g088500 0.772457139275 9 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP2 0.763970473328 12 Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 0.761386162732 17 Cre17.g731050 ABC transporter I family member 20 OS=Arabidopsis thaliana ATNAP9, NAP9 0.756896818942 21 Cre13.g562850 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb29 protein PSB29, THF1 0.755443585313 16 Cre06.g283750 Coenzyme metabolism.prenylquinone synthesis.plastoquinone synthesis.HST homogentisate solanesyltransferase HST, ATHST, PDS2 0.750170727064 49 Cre03.g145567 0.749045685083 15 Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 0.74735948648 21 Cre03.g195200 0.742016757717 17 Cre13.g580300 ABC transporter I family member 19 OS=Arabidopsis thaliana 0.74109993724 22 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.731141384425 24 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase FAD4, FADA 0.728634354634 20 Cre06.g273700 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.726762100866 21 Cre03.g144184 0.721774510693 24 Cre17.g720050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH8 0.721602826526 24 Cre16.g662150 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component CCB1 0.720364347699 90 Cre01.g055151 0.717055010817 25 Cre01.g016150 0.715995474531 26 Cre12.g485800 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component FTSH1 0.713308023514 27 Cre12.g509650 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226 0.710181125938 90 Cre12.g519300 0.70912995871 33 Cre13.g578650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.701460999825 85 Cre04.g215000 Beta-carotene ketolase OS=Haematococcus lacustris 0.699824068602 68 Cre07.g315150 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.RBD1 protein 0.699477660425 33 Cre03.g197750 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase PHGPX, GPX6, ATGPX6, LSC803 0.698685083244 34 Cre06.g274650 0.698663169036 35 Cre06.g290350 0.694202944254 36 Cre03.g176350 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 0.694122890301 50 Cre13.g571560 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component DET1, ATDET1, FUS2 0.693025702965 38 Cre03.g167051 Coenzyme metabolism.pyridoxalphosphate synthesis.pyridoxal 5-phosphate synthase complex.glutaminase component EMB2407, ATPDX2, PDX2 0.688380104599 74 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 0.688285897826 40 Cre17.g740950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.687684268302 41 Cre01.g053850 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana SPA2 0.681631699898 43 Cre10.g440450 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28 0.681365343172 47 Cre09.g395650 0.680886555576 45 Cre10.g444550 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA 0.679110854698 46 Cre13.g565650 Coenzyme metabolism.prenylquinone synthesis.ubiquinone synthesis.SPS1/2 solanesyl diphosphate synthase SPS1 0.672510837944 48 Cre05.g242400 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGR5-like component PGR5 0.670572626388 49 Cre01.g021800 0.669035890737 86 Cre02.g109950 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein 0.666965401106 51 Cre12.g558550 Pheophytinase, chloroplastic OS=Arabidopsis thaliana 0.662767667545 52 Cre17.g729800 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3 0.656586852998 56 Cre08.g365900 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LhcSR-dependent machinery.LhcSR protein LHCA2 0.653496409355 58 Cre13.g587500 Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica 0.646753476752 60 Cre12.g514400 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor RVE2, CIR1 0.64607793058 61 Cre16.g690350 0.636554325781 63 Cre04.g215050 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid beta ring hydroxylase BETA-OHASE 1, chy1, B1, BCH1 0.630864291465 65 Cre06.g267600 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-e lycopene epsilon cyclase LUT2 0.627420414089 85 Cre08.g360850 0.626667146037 70 Cre08.g380000 0.624991370109 71 Cre16.g677800 0.610911088149 80 Cre06.g251150 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP2 protein OHP2 0.610707735199 81 Cre10.g461900 Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana 0.609233257347 82 Cre04.g225050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component 0.593036115625 87 Cre09.g389578 PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana 0.586370218577 89 Cre06.g310500 External stimuli response.light.UV-B light.UV-B signal transduction transcriptional regulator HYH 0.583743097431 91