Sequence Description Alias PCC hrr Cre16.g662150 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component CCB1 0.883247414419 1 Cre12.g509650 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226 0.854391070446 4 Cre13.g578650 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein HCF173 0.846105261867 6 Cre07.g314150 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase PDE181, ZDS, SPC1 0.844203706856 9 Cre16.g670500 0.842684743359 6 Cre16.g673617 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor APG3 0.841977962912 18 Cre05.g241639 0.8389987536 17 Cre02.g079600 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase 0.837610547444 8 Cre17.g715000 0.837145556396 9 Cre09.g394750 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component RPS1, ARRPS1 0.832304932672 20 Cre12.g519180 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor emb2726 0.832049932651 47 Cre03.g165000 Translation factor GUF1 homolog, chloroplastic OS=Arabidopsis thaliana 0.819522402098 24 Cre03.g167051 Coenzyme metabolism.pyridoxalphosphate synthesis.pyridoxal 5-phosphate synthase complex.glutaminase component EMB2407, ATPDX2, PDX2 0.819424985453 13 Cre16.g659950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS5 component 0.817591534798 55 Cre03.g177200 RNA-binding protein BRN1 OS=Arabidopsis thaliana FCA 0.817455803093 38 Cre06.g301650 0.815313891045 39 Cre02.g082877 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase ATSRS, OVA7, SRS 0.813397975916 39 Cre14.g624350 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.gamma-tocopherol methyltransferase (VTE4/TMT) G-TMT, VTE4, TMT1 0.808114931627 18 Cre02.g088900 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component 0.806725833188 45 Cre13.g562850 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb29 protein PSB29, THF1 0.802539148638 20 Cre06.g273700 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein HCF136 0.798699298019 21 Cre02.g083950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component 0.79254467083 73 Cre16.g679250 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein ELIP2 0.79186542306 23 Cre03.g201050 0.785599086272 24 Cre10.g440450 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28 0.782532737309 25 Cre03.g148950 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.781974284919 49 Cre09.g411200 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein 0.779915498788 27 Cre03.g146167 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HHL1 protein 0.776439407764 83 Cre02.g108850 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL17 component 0.770658283996 76 Cre16.g686350 0.770006841997 30 Cre13.g578451 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase EMB2369 0.765357847336 99 Cre13.g580850 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL22 component RPL22 0.765106264093 47 Cre04.g215000 Beta-carotene ketolase OS=Haematococcus lacustris 0.764602938668 33 Cre08.g358540 0.761151106157 34 Cre17.g729800 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3 0.760315405073 35 Cre07.g350500 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase EMB2247 0.760196758595 62 Cre14.g610850 0.758946921985 37 Cre12.g519300 0.758840127144 38 Cre48.g761197 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL3 component 0.756073221561 74 Cre16.g673001 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase FAD4, FADA 0.754853448324 41 Cre06.g265800 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL28 component 0.754702371343 58 Cre03.g188700 Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana 0.753883133467 43 Cre02.g142146 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein 0.752504137267 44 Cre09.g398252 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana 0.751621104625 46 Cre06.g264350 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component emb1473 0.750456854744 54 Cre02.g078939 Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri CRY3 0.750170727064 49 Cre03.g195200 0.74824949703 50 Cre12.g556600 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase ALDH11A3 0.746438527718 51 Cre06.g263850 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter CUE1, PPT, ARAPPT 0.745708634975 77 Cre12.g517900 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component SECA1, AtcpSecA, AGY1 0.742959887884 96 Cre08.g365400 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL31 component emb2184 0.740980069862 95 Cre01.g017300 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component 0.740552477003 75 Cre01.g016150 0.740258004946 61 Cre08.g384650 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.three-helix LHC-related protein group.ELIP protein 0.737503093817 62 Cre13.g581650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component 0.736811973582 97 Cre01.g021800 0.734971420047 66 Cre12.g508300 0.734214702079 74 Cre08.g360850 0.732622285304 69 Cre04.g225050 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component 0.73003368681 72 Cre06.g266900 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana 0.729708240181 73 Cre03.g205900 Polyamine metabolism.spermidine/spermine.synthesis.S-adenosyl methionine decarboxylase SAMDC 0.727431325463 74 Cre10.g423650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL11 component PRPL11 0.726849009738 75 Cre03.g144164 Protein modification.peptide maturation.plastid.AraSP plastidial inner envelope protease ARASP 0.725831123613 78 Cre06.g272850 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component 0.72425088276 79 Cre15.g643600 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.SUF-B component ATNAP1, ATABC1, ABC1, LAF6 0.723813004552 81 Cre01.g055151 0.722676199557 83 Cre01.g028600 Tropinone reductase homolog At2g29290 OS=Arabidopsis thaliana 0.722112399082 84 Cre06.g300800 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana RPL27 0.721111411888 88 Cre16.g684300 YLMG2, ATYLMG2 0.716234352564 88 Cre24.g755197 0.715944872503 89 Cre11.g479500 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component RPL4 0.713548668626 93 Cre04.g218700 Protein biosynthesis.organelle translation machineries.translation initiation.IF-1 initiation factor 0.711985218701 94 Cre06.g290350 0.711868016002 95 Cre04.g215050 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid beta ring hydroxylase BETA-OHASE 1, chy1, B1, BCH1 0.71106379949 96 Cre10.g456650 0.710935272317 97 Cre06.g264300 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS15 component 0.710596565232 98 Cre12.g556050 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component 0.710253398048 100