Sequence Description Alias PCC hrr Cpa|evm.model.tig00020965.70 Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum CRY3 0.9497609365394741 8 Cpa|evm.model.tig00020952.44 DNA damage response.DNA repair mechanisms.photoreactivation.class II photolyase (PHR1) UVR2, PHR1 0.9476834786813374 10 Cpa|evm.model.tig00000949.24 ATCCD1, CCD1, NCED1, ATNCED1 0.9453133043788083 15 Cpa|evm.model.tig00021537.1 Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana 0.9427778214652841 12 Cpa|evm.model.tig00021127.131 0.9422595988727496 21 Cpa|evm.model.tig00000663.54 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA 0.941040200685035 26 Cpa|evm.model.tig00000378.18 0.9400425813269967 19 Cpa|evm.model.tig00000254.94 0.9361631912692677 28 Cpa|evm.model.tig00001071.14 Carotenoid 9,10(9,10)-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar ATCCD1, CCD1, NCED1, ATNCED1 0.9358451396003982 23 Cpa|evm.model.tig00021493.41 0.9353042149090426 11 Cpa|evm.model.tig00020539.39 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.9347069405874933 13 Cpa|evm.model.tig00021721.8 0.9334607174295023 35 Cpa|evm.model.tig00000204.80 Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana 0.9326290739812851 30 Cpa|evm.model.tig00020723.64 0.927876619690022 32 Cpa|evm.model.tig00021254.26 0.9260864105556654 24 Cpa|evm.model.tig00000821.30 0.9258725157390657 37 Cpa|evm.model.tig00000806.35 0.9243541476593089 17 Cpa|evm.model.tig00021617.18 0.9209388644363651 18 Cpa|evm.model.tig00000042.42 0.9148351597225142 24 Cpa|evm.model.tig00021616.13 0.9126758902577332 48 Cpa|evm.model.tig00000655.47 TZ, THI4, THI1 0.9109323427937527 54 Cpa|evm.model.tig00000344.14 0.907079932774246 22 Cpa|evm.model.tig00001339.10 Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana 0.9061665416950826 66 Cpa|evm.model.tig00000737.24 0.902782492531099 42 Cpa|evm.model.tig00020553.190 ABC transporter C family member 4 OS=Arabidopsis thaliana ATABCC5, MRP5, ATMRP5, ABCC5 0.901529261009667 75 Cpa|evm.model.tig00001126.7 0.9011105226453098 86 Cpa|evm.model.tig00000144.28 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8981076723963223 36 Cpa|evm.model.tig00001278.14 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiamine diphosphokinase TPK2 0.8976325064000309 37 Cpa|evm.model.tig00000057.44 0.8969854346961997 70 Cpa|evm.model.tig00020557.25 0.8955291252042362 81 Cpa|evm.model.tig00020556.38 0.8946944987220276 73 Cpa|evm.model.tig00000404.56 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8943767413458499 54 Cpa|evm.model.tig00000241.155 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor APE1 0.8937202512055064 47 Cpa|evm.model.tig00000955.24 0.8936048795032272 79 Cpa|evm.model.tig00021680.19 0.8926395518241762 35 Cpa|evm.model.tig00000459.54 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8922381952990553 50 Cpa|evm.model.tig00021373.6 Peroxiredoxin Q, chloroplastic OS=Triticum aestivum 0.8920935770968155 57 Cpa|evm.model.tig00020734.51 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum 0.8916766134507454 66 Cpa|evm.model.tig00020553.186 0.8913969786521792 39 Cpa|evm.model.tig00000478.28 Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana 0.890780665424268 40 Cpa|evm.model.tig00001215.19 0.8905686734822563 68 Cpa|evm.model.tig00021374.35 0.890517240290154 84 Cpa|evm.model.tig00022104.1 0.8890512669717632 55 Cpa|evm.model.tig00020675.83 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana RUS1 0.8856112868433791 49 Cpa|evm.model.tig00001487.8 0.8853601651617381 45 Cpa|evm.model.tig00001258.10 0.8850912800786573 46 Cpa|evm.model.tig00000981.5 0.8849799073291621 47 Cpa|evm.model.tig00022075.74 0.8844131123170998 76 Cpa|evm.model.tig00000093.105 Protein degradation.peptidase families.serine-type peptidase activities.LON protease 0.8834657161121567 98 Cpa|evm.model.tig00000093.172 0.8829694547009245 55 Cpa|evm.model.tig00020710.126 0.8823596892122773 51 Cpa|evm.model.tig00020592.4 ABC transporter C family member 1 OS=Arabidopsis thaliana ATMRP12, MRP12, ABCC11 0.8807882251856687 65 Cpa|evm.model.tig00020723.8 0.8804701733067891 54 Cpa|evm.model.tig00000551.3 0.8802587809767397 60 Cpa|evm.model.tig00000215.56 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana 0.8799025149116817 56 Cpa|evm.model.tig00021135.14 0.8790424127977085 64 Cpa|evm.model.tig00020560.15 0.8782331020430768 58 Cpa|evm.model.tig00000670.28 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.8771804159989797 59 Cpa|evm.model.tig00021579.19 Cryptochrome-1 OS=Arabidopsis thaliana ATCRY2, CRY2, PHH1, AT-PHH1, FHA 0.8758036230663063 85 Cpa|evm.model.tig00021312.29 MO1 0.8756462936719313 63 Cpa|evm.model.tig00020553.74 0.8749353808155251 64 Cpa|evm.model.tig00001310.4 0.8731672901306484 83 Cpa|evm.model.tig00000823.29 DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana 0.8722128110923556 67 Cpa|evm.model.tig00001024.2 ABC transporter C family member 14 OS=Arabidopsis thaliana AtABCC2, ABCC2, ATMRP2, EST4, MRP2 0.8719366182483725 68 Cpa|evm.model.tig00000310.32 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.8717681641613301 69 Cpa|evm.model.tig00000079.6 0.8704632028897653 77 Cpa|evm.model.tig00000248.71 0.8701151352128799 80 Cpa|evm.model.tig00000711.69 DNA repair protein RAD5B OS=Arabidopsis thaliana 0.8695939217289415 72 Cpa|evm.model.tig00000586.13 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP1 protein 0.8691914041315649 73 Cpa|evm.model.tig00000551.6 0.8683776635316033 97 Cpa|evm.model.tig00000042.43 Histidine kinase 3 OS=Arabidopsis thaliana ETR, ETR1, EIN1, AtETR1 0.8681029068552361 75 Cpa|evm.model.tig00020909.30 0.8663522013277504 76 Cpa|evm.model.tig00021680.1 0.8658947110827 78 Cpa|evm.model.tig00020943.73 RNA biosynthesis.transcriptional activation.bHLH transcription factor 0.8632285697317255 81 Cpa|evm.model.tig00021582.39 ABC transporter G family member 22 OS=Arabidopsis thaliana 0.8631202733894461 82 Cpa|evm.model.tig00000342.41 0.8605091921119307 84 Cpa|evm.model.tig00000248.21 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana UPF1, ATUPF1, LBA1 0.8599674513241222 85 Cpa|evm.model.tig00001095.26 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 0.8595724169058696 87 Cpa|evm.model.tig00000361.1 0.8593519891920393 88 Cpa|evm.model.tig00021108.36 External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial OS=Arabidopsis thaliana NDA2 0.8583924904909652 89 Cpa|evm.model.tig00020553.191 ABC transporter C family member 11 OS=Arabidopsis thaliana ATMRP12, MRP12, ABCC11 0.8583113926542737 90 Cpa|evm.model.tig00000402.46 0.8566243538882844 92 Cpa|evm.model.tig00000553.12 0.854402452759386 92 Cpa|evm.model.tig00020952.27 Deoxyribodipyrimidine photo-lyase OS=Oryza sativa subsp. japonica UVR2, PHR1 0.8534812697122662 94 Cpa|evm.model.tig00001085.20 Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana ATPREP2, PREP2 0.8524377152163666 95 Cpa|evm.model.tig00000980.32 0.8510012278310313 97 Cpa|evm.model.tig00000718.1 ABC transporter C family member 2 OS=Arabidopsis thaliana AtABCC2, ABCC2, ATMRP2, EST4, MRP2 0.849358030056504 98 Cpa|evm.model.tig00000691.29 0.8464820195374815 100