Sequence Description Alias PCC hrr Cpa|evm.model.tig00000142.3 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3d component 0.909434773772905 3 Cpa|evm.model.tig00020710.89 Protein translocation.mitochondrion.inner mitochondrion membrane TIM22 insertion system.Tim9 component TIM9, emb2474 0.9030560970253915 2 Cpa|evm.model.tig00000310.30 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Gar1 core component 0.9028418361207796 3 Cpa|evm.model.tig00020629.98 ABC transporter F family member 3 OS=Arabidopsis thaliana GCN3, ATGCN3 0.900961554996675 5 Cpa|evm.model.tig00020684.42 0.8971978334838563 5 Cpa|evm.model.tig00001278.11 RNA processing.RNA modification.rRNA/tRNA methylation.TRM8-TRM82 tRNA guanosine-methyltransferase complex.TRM82 component AtTRM82, TRM82 0.8902733167571033 9 Cpa|evm.model.tig00001073.20 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component NOP56 0.889589223298049 7 Cpa|evm.model.tig00000241.158 Eukaryotic translation initiation factor NCBP OS=Oryza sativa subsp. japonica NCBP 0.8848631222870512 8 Cpa|evm.model.tig00000553.10 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component CBF5, AtCBF5, NAP57, AtNAP57 0.8840604955144201 9 Cpa|evm.model.tig00000404.31 0.8797800200282357 10 Cpa|evm.model.tig00000615.12 0.8746729067327053 11 Cpa|evm.model.tig00000852.39 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor 0.8708339673771165 14 Cpa|evm.model.tig00021350.31 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop58 snoRNP scaffold component 0.8622036115442412 13 Cpa|evm.model.tig00021168.21 RNA processing.RNA modification.rRNA/tRNA methylation.TRM1 tRNA guanosine-methyltransferase 0.8606369891177793 20 Cpa|evm.model.tig00000880.2 0.8530464120523333 15 Cpa|evm.model.tig00000382.38 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.BOP1 component 0.8444394253874445 25 Cpa|evm.model.tig00000093.10 Cold shock protein 1 OS=Arabidopsis thaliana 0.8436112644571736 17 Cpa|evm.model.tig00021222.7 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.RNPS1 component RNPS1, SR45 0.8431070589326324 18 Cpa|evm.model.tig00021464.39 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor LOS1 0.8421482218293552 19 Cpa|evm.model.tig00021525.7 0.8421210507064518 20 Cpa|evm.model.tig00020734.25 DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana PMH2, ATRH53 0.8371364818876603 21 Cpa|evm.model.tig00000204.26 0.8368628206742628 23 Cpa|evm.model.tig00001355.7 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3f component EIF2, AteIF3f, eIF3F 0.8355381654180157 23 Cpa|evm.model.tig00021432.35 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase 0.8345490196773656 24 Cpa|evm.model.tig00001049.16 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component FIB1, ATFIB1, ATFBR1, FBR1, SKIP7 0.8285349540539652 25 Cpa|evm.model.tig00020544.5 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica 0.8274506049760266 27 Cpa|evm.model.tig00000545.36 0.8274416337289769 29 Cpa|evm.model.tig00020961.62 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component 0.8258278365945019 28 Cpa|evm.model.tig00020614.25 Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.8244022526383168 29 Cpa|evm.model.tig00020562.25 RNA processing.RNA modification.rRNA/tRNA methylation.TRM4 tRNA cytidine-methyltransferase 0.8243309657670861 30 Cpa|evm.model.tig00000114.21 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.OLI2 maturation factor OLI2 0.8168451886683419 31 Cpa|evm.model.tig00021319.44 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic22 component 0.8117116867942978 32 Cpa|evm.model.tig00021108.10 0.80971493090342 33 Cpa|evm.model.tig00000553.33 ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum EBP1, ATEBP1, ATG2 0.8081504807066575 34 Cpa|evm.model.tig00021319.4 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.aspartate transcarbamoylase PYRB 0.8080563272193378 37 Cpa|evm.model.tig00020912.53 RNA processing.RNA decay.exosome complex.EXO9 core complex.RRP43 component 0.8068115183252427 36 Cpa|evm.model.tig00021464.56 Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana 0.8067991426902328 37 Cpa|evm.model.tig00001065.39 0.8029466838012043 38 Cpa|evm.model.tig00001073.2 0.8008915339415695 39 Cpa|evm.model.tig00000655.55 RNA processing.RNA decay.exosome complex.EXO9 core complex.RRP4 component ATRRP4, RRP4 0.8005345086123755 40 Cpa|evm.model.tig00000663.67 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP15 0.7998147024845526 41 Cpa|evm.model.tig00020848.60 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3b component EIF3B-2, ATEIF3B-2, EIF3B 0.7988080833109378 49 Cpa|evm.model.tig00020903.23 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3m component 0.7964203544446574 43 Cpa|evm.model.tig00021680.14 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.NST nucleotide sugar transporter 0.7955463796057941 44 Cpa|evm.model.tig00021350.37 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine gamma-synthase MTO1, CGS1, CGS, ATCYS1 0.7946807056623434 87 Cpa|evm.model.tig00020912.51 Peter Pan-like protein OS=Arabidopsis thaliana PPAN 0.7930313179107886 46 Cpa|evm.model.tig00020830.37 Protein modification.lipidation.Glycophosphatidylinositol (GPI)-anchor addition.GPI transamidase complex.GAA1 component 0.7912585148956274 73 Cpa|evm.model.tig00000545.46 0.7904000986500048 48 Cpa|evm.model.tig00020930.21 0.7881651408696794 49 Cpa|evm.model.tig00021537.15 Ribose-phosphate pyrophosphokinase 1 OS=Spinacia oleracea 0.7879677600660371 52 Cpa|evm.model.tig00001130.17 0.787260705740005 51 Cpa|evm.model.tig00021680.29 0.7869506859342473 65 Cpa|evm.model.tig00021612.49 0.783187173398374 53 Cpa|evm.model.tig00020675.101 0.7823775906814628 54 Cpa|evm.model.tig00000383.51 ABC transporter F family member 1 OS=Arabidopsis thaliana ATGCN1, GCN1 0.7816665918615311 55 Cpa|evm.model.tig00000842.12 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3c component EIF3C, EIF3C-1, ATTIF3C1, TIF3C1, ATEIF3C-1 0.7797492742879185 56 Cpa|evm.model.tig00000605.11 rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana 0.7768920385953678 78 Cpa|evm.model.tig00001206.16 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.BRX1 assembly factor 0.7758923212744524 58 Cpa|evm.model.tig00021720.10 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.threonine.threonine synthase MTO2, TS 0.7721746777314202 92 Cpa|evm.model.tig00000128.23 0.7720785535289428 61 Cpa|evm.model.tig00021350.5 Eukaryotic translation initiation factor 4G OS=Triticum aestivum CUM2, EIF4G 0.7718701993711842 62 Cpa|evm.model.tig00000140.10 Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana 0.7707799130190256 64 Cpa|evm.model.tig00000741.6 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.dihydroxy-acid dehydratase 0.7702930735523463 65 Cpa|evm.model.tig00022075.15 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3l component 0.7695994933850507 82 Cpa|evm.model.tig00000605.10 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.RRP5 assembly factor 0.7683238439281089 82 Cpa|evm.model.tig00020780.29 RNA processing.RNA decay.exosome complex.EXO9 core complex.RRP45 component CER7, G3 0.7675911282089546 68 Cpa|evm.model.tig00020848.30 Stromal processing peptidase, chloroplastic OS=Pisum sativum 0.7669636054685334 79 Cpa|evm.model.tig00000241.143 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 196.5) & Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana MNS1, MANIB 0.7660923351968859 84 Cpa|evm.model.tig00000194.37 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component ATTIF3A1, ATEIF3A-1, EIF3A-1, TIF3A1, EIF3A 0.7653628618304842 73 Cpa|evm.model.tig00021348.51 0.7649901491566797 74 Cpa|evm.model.tig00000741.5 Dihydroxy-acid dehydratase, chloroplastic OS=Arabidopsis thaliana 0.7649159942023116 75 Cpa|evm.model.tig00000113.111 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana FAS4, ATFAS4 0.7631969377625714 76 Cpa|evm.model.tig00001107.19 Secondary metabolism.terpenoids.terpenoid synthesis.triterpenoid synthase CAS1 0.7628820752342376 77 Cpa|evm.model.tig00001428.2 0.761760447029179 78 Cpa|evm.model.tig00000718.62 0.7612165888368008 85 Cpa|evm.model.tig00001181.31 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.aminoimidazole RN carboxylase 0.7607372303527202 82 Cpa|evm.model.tig00001525.7 Vacuole membrane protein KMS1 OS=Arabidopsis thaliana 0.7598354161434636 84 Cpa|evm.model.tig00021348.38 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana NRPA2 0.7593339527846917 85 Cpa|evm.model.tig00000459.94 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst ROC5, ATCYP1 0.7593161056555018 86 Cpa|evm.model.tig00000523.20 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.alternative pathway.ornithine aminotransferase DELTA-OAT 0.7588565154759167 87 Cpa|evm.model.tig00001493.9 0.7570618590817452 95 Cpa|evm.model.tig00020934.53 0.7559398662833059 92 Cpa|evm.model.tig00020965.56 Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana 0.7536066359147446 97 Cpa|evm.model.tig00000711.7 Protein biosynthesis.aminoacyl-tRNA synthetase activities.arginine-tRNA ligase emb1027 0.753365404687043 98 Cpa|evm.model.tig00000571.29 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor 0.7531931436514503 99 Cpa|evm.model.tig00000983.33 Chromatin organisation.histone modifications.histone deacetylation.HD2 histone deacetylase 0.7531144587895025 100