Sequence Description Alias PCC hrr Cpa|evm.model.tig00000863.17 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana SMU1 0.9512910563610456 4 Cpa|evm.model.tig00021612.44 0.9321307824503057 7 Cpa|evm.model.tig00000194.23 0.9311096376606974 3 Cpa|evm.model.tig00001107.11 Secondary metabolism.terpenoids.terpenoid synthesis.cycloartenol synthesis.squalene synthase ERG9, SQS1 0.9273111051439552 6 Cpa|evm.model.tig00020848.67 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.zeta subunit 0.9222299879778144 17 Cpa|evm.model.tig00021589.1 0.9200254858132048 17 Cpa|evm.model.tig00021123.23 0.9164068320817804 7 Cpa|evm.model.tig00020918.9 0.9137809307638735 14 Cpa|evm.model.tig00020903.14 Protein degradation.peptidase families.cysteine-type peptidase activities.UFM1-specific protease 0.913393918093356 15 Cpa|evm.model.tig00020553.161 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase NRS/ER, UER1 0.9129116361707216 44 Cpa|evm.model.tig00001049.12 0.912823656400718 16 Cpa|evm.model.tig00021357.28 Protein modification.phosphorylation.atypical kinase families.RIO kinase 0.911547473103873 12 Cpa|evm.model.tig00020780.6 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO activating E1 complex.small component (SAE1) AXL 0.9107479137583102 18 Cpa|evm.model.tig00001206.10 Peptide chain release factor APG3, chloroplastic OS=Arabidopsis thaliana APG3 0.9083477483108817 18 Cpa|evm.model.tig00001372.8 0.9073305252293723 15 Cpa|evm.model.tig00000217.34 0.9059425168629656 16 Cpa|evm.model.tig00000217.28 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component PR 65, PP2AA2, PDF1 0.9055821564475593 39 Cpa|evm.model.tig00021319.66 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC3/Tex1 component THO3, TEX1, AtTEX1 0.9054226747444767 39 Cpa|evm.model.tig00021123.42 0.9035117350279157 19 Cpa|evm.model.tig00000704.66 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor 0.9026884844626896 20 Cpa|evm.model.tig00001049.17 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB ligase E3 activities.RUB ligase E3 protein (DCN1) 0.9023158016100142 21 Cpa|evm.model.tig00000037.33 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3g component ATEIF3G1, EIF3G1 0.9017545252259415 22 Cpa|evm.model.tig00001107.12 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component emb1220 0.9014695547770084 44 Cpa|evm.model.tig00020918.7 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease 0.8993504613466824 24 Cpa|evm.model.tig00001206.15 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SYF1/MAC9 component 0.8983925540445475 36 Cpa|evm.model.tig00001085.3 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component RFC3, RFC5 0.8983727918240254 26 Cpa|evm.model.tig00000863.20 Protein modification.peptide maturation.endomembrane system.SPC endoplasmic signal peptidase complex.SEC11 catalytic component 0.8976885294137947 27 Cpa|evm.model.tig00000037.40 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.URGT/UXT nucleotide sugar transporter 0.8974563986277785 28 Cpa|evm.model.tig00000203.32 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP remodeling.DBP5/LOS4 ATP-dependent helicase LOS4 0.8964006035992614 29 Cpa|evm.model.tig00020554.15 0.8963090026340856 30 Cpa|evm.model.tig00020554.128 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class II ARF-GAP protein AGD8 0.8953074263009222 34 Cpa|evm.model.tig00021319.34 0.8924106374442451 32 Cpa|evm.model.tig00020544.9 DNA repair protein UVH3 OS=Arabidopsis thaliana UVR1, UVH3 0.8919741047283559 33 Cpa|evm.model.tig00000980.1 0.890823936138115 34 Cpa|evm.model.tig00000217.22 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MOS4 component 0.8908064208611172 35 Cpa|evm.model.tig00000241.31 0.8907676152101904 36 Cpa|evm.model.tig00000076.86 0.8904521977896224 37 Cpa|evm.model.tig00020703.9 26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana 0.8901385247825947 38 Cpa|evm.model.tig00001107.3 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase IPP1 0.8884904948429652 39 Cpa|evm.model.tig00000319.25 Cytoskeleton.microfilament network.actin filament protein ACT11 0.8875888303071734 40 Cpa|evm.model.tig00020614.104 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG3 ATG8-conjugation E2 protein ATG3, ATATG3 0.8873523818821719 41 Cpa|evm.model.tig00000615.75 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN7 regulatory component 0.8841332375692436 60 Cpa|evm.model.tig00021464.27 0.8839656548925985 45 Cpa|evm.model.tig00000829.13 0.883119468735576 44 Cpa|evm.model.tig00020554.138 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component 0.8825370601979671 45 Cpa|evm.model.tig00000829.9 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN10 regulatory component RPN10, MCB1, ATMCB1, MBP1 0.8825185877464826 66 Cpa|evm.model.tig00020780.13 0.8823622234783254 47 Cpa|evm.model.tig00000980.3 RNA biosynthesis.transcriptional activation.TUB transcription factor TLP2, AtTLP2 0.8823008869676142 48 Cpa|evm.model.tig00021234.15 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED7 component 0.8814177416490296 49 Cpa|evm.model.tig00000704.40 0.881164297477756 68 Cpa|evm.model.tig00000704.21 COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana 0.8808650133734615 72 Cpa|evm.model.tig00001424.2 0.8798401487886894 52 Cpa|evm.model.tig00000241.58 0.8798093471849382 53 Cpa|evm.model.tig00000842.2 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana 0.8790016295174795 79 Cpa|evm.model.tig00000144.174 Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GLYR1, GHBDH, GR1, ATGHBDH 0.8784430445210576 55 Cpa|evm.model.tig00000704.26 0.8769987252823012 56 Cpa|evm.model.tig00000144.166 Actin-related protein 5 OS=Arabidopsis thaliana ARP5, ATARP5 0.8761701843420169 95 Cpa|evm.model.tig00001229.22 GPN-loop GTPase QQT1 OS=Arabidopsis thaliana EMB1705, QQT1 0.8757732525800176 58 Cpa|evm.model.tig00021357.2 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD4 component PFD4, AIP3 0.8756294516364479 66 Cpa|evm.model.tig00021464.17 Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana ATRHM2, RHM2, ATMUM4, MUM4 0.8742888014313007 60 Cpa|evm.model.tig00000704.50 0.8738734111250659 82 Cpa|evm.model.tig00000944.23 Protein degradation.peptide tagging.Homologous-to-Ubiquitin (HUB)-anchor addition.HUB ubiquitin-fold protein 0.8729570592997121 62 Cpa|evm.model.tig00020554.114 0.872690901237345 63 Cpa|evm.model.tig00020903.27 Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana 0.8719753737355288 98 Cpa|evm.model.tig00021348.86 Translocase of chloroplast 34 OS=Pisum sativum 0.8715342669362209 66 Cpa|evm.model.tig00000704.62 0.8710481773847946 67 Cpa|evm.model.tig00001107.4 Deoxyhypusine synthase OS=Senecio vernalis DHS, EDA22 0.8708037047869044 68 Cpa|evm.model.tig00000404.30 Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.SRP19 component 0.8701134218771454 69 Cpa|evm.model.tig00000789.45 0.8696696794696124 70 Cpa|evm.model.tig00000402.27 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-I/II/III complex-shared components.BET3 component 0.8692253795333003 71 Cpa|evm.model.tig00021502.1 0.8687146426538938 73 Cpa|evm.model.tig00000704.63 0.8685408005067968 74 Cpa|evm.model.tig00000350.27 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.alpha subunit 0.8682620217792649 75 Cpa|evm.model.tig00000203.14 0.8682341070046258 81 Cpa|evm.model.tig00000704.30 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.regulatory subunits.subunit 3 NRPB3, RPB35.5A, RBP36A, NRPD3, NRPE3A 0.8681576738786894 77 Cpa|evm.model.tig00000829.26 Cell cycle.interphase.DNA replication.initiation.GINS DNA replication fork maintenance complex.PSF2 component PSF2 0.8678743683274625 78 Cpa|evm.model.tig00000383.37 Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia ATU2AF65A 0.8667995581422837 79 Cpa|evm.model.tig00020614.99 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.GPN1/QQT2 nuclear import factor QQT2 0.8641450221586646 98 Cpa|evm.model.tig00020830.57 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 0.8631330389259159 83 Cpa|evm.model.tig00000789.42 0.8623231589477821 84 Cpa|evm.model.tig00020538.71 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF12 component TAFII58, TAF12 0.861682305753456 85 Cpa|evm.model.tig00000829.11 Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana AtTMN7, TMN7 0.8607826362295623 86 Cpa|evm.model.tig00000704.42 0.8604786537769887 87 Cpa|evm.model.tig00001206.20 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qa-type SNARE components.SYP4-group protein SYP43, ATSYP43 0.8604527506522281 88 Cpa|evm.model.tig00000829.20 Protein degradation.ER-associated protein degradation (ERAD) machinery.DFM1 component DER2.2 0.8603669091954451 89 Cpa|evm.model.tig00000829.3 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component CEF 0.8599724352450391 90 Cpa|evm.model.tig00000241.28 U2 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana U2A' 0.8591473313354219 91 Cpa|evm.model.tig00001333.27 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component U1-70K, U1SNRNP 0.8585736279452736 93 Cpa|evm.model.tig00020554.144 0.8577624810949335 95 Cpa|evm.model.tig00020538.72 0.857675070652001 96 Cpa|evm.model.tig00000350.30 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor 0.8575258528707943 99 Cpa|evm.model.tig00020684.43 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Bud31 component 0.856511873527923 98 Cpa|evm.model.tig00000857.6 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.P23 Hsp90-co-chaperone 0.8565079311969276 99 Cpa|evm.model.tig00020554.157 Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana UBP6, ATUBP6 0.8564403615182935 100