Sequence Description Alias PCC hrr Cpa|evm.model.tig00020943.85 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica 0.8999365869186983 4 Cpa|evm.model.tig00020693.9 0.8905760285592598 4 Cpa|evm.model.tig00000571.29 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UPT6 assembly factor 0.8868344352864804 3 Cpa|evm.model.tig00021721.26 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP12 assembly factor 0.8777508955586544 16 Cpa|evm.model.tig00020710.44 0.8772608267392324 5 Cpa|evm.model.tig00020675.101 0.8766335932134034 6 Cpa|evm.model.tig00021108.9 0.8753226071762241 8 Cpa|evm.model.tig00020848.30 Stromal processing peptidase, chloroplastic OS=Pisum sativum 0.87503516638036 8 Cpa|evm.model.tig00021319.4 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.aspartate transcarbamoylase PYRB 0.8707390768569147 14 Cpa|evm.model.tig00000388.55 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 112.3) & Protein arginine N-methyltransferase 7 OS=Oryza sativa subsp. indica PRMT7, ATPRMT7 0.8665827677370869 10 Cpa|evm.model.tig00000169.25 0.8665766443423636 11 Cpa|evm.model.tig00001250.8 0.8594253389487563 12 Cpa|evm.model.tig00000123.23 0.8581870159725056 13 Cpa|evm.model.tig00000403.82 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1) 0.8549046312796909 14 Cpa|evm.model.tig00000114.21 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.OLI2 maturation factor OLI2 0.8540353974688195 15 Cpa|evm.model.tig00000382.38 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.BOP1 component 0.8517330821403937 18 Cpa|evm.model.tig00021133.10 RNA processing.ribonuclease activities.RNase Z endoribonuclease TRZ4 0.8515820034696528 17 Cpa|evm.model.tig00021168.21 RNA processing.RNA modification.rRNA/tRNA methylation.TRM1 tRNA guanosine-methyltransferase 0.8488337741729189 22 Cpa|evm.model.tig00000571.5 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor 0.8464608759256461 19 Cpa|evm.model.tig00021179.21 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Rrp9/YAO1 assembly factor EMB2271 0.8457824183363614 20 Cpa|evm.model.tig00000769.35 WD repeat-containing protein 55 OS=Arabidopsis thaliana 0.844339119208385 21 Cpa|evm.model.tig00000144.75 0.8443053539467431 22 Cpa|evm.model.tig00000545.36 0.8440509707495613 23 Cpa|evm.model.tig00020723.108 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase 0.8422893958089159 24 Cpa|evm.model.tig00000197.6 RNA biosynthesis.RNA polymerase II-dependent transcription.ELONGATOR transcription elongation complex.DRL1 regulator protein DRL1, AtKTI12 0.8317659093500958 25 Cpa|evm.model.tig00000144.74 Notchless protein homolog OS=Arabidopsis thaliana 0.8315830358434296 26 Cpa|evm.model.tig00000525.10 Cell division control protein 48 homolog C OS=Arabidopsis thaliana emb1354, CDC48C 0.829394163474168 27 Cpa|evm.model.tig00000448.24 0.8289997891360855 28 Cpa|evm.model.tig00000655.55 RNA processing.RNA decay.exosome complex.EXO9 core complex.RRP4 component ATRRP4, RRP4 0.826206895501959 29 Cpa|evm.model.tig00000478.23 0.8254204534205483 31 Cpa|evm.model.tig00020684.42 0.8237720567637111 31 Cpa|evm.model.tig00020911.15 WD repeat-containing protein GTS1 OS=Arabidopsis thaliana 0.8235644958757684 32 Cpa|evm.model.tig00021521.23 0.8221251272131688 33 Cpa|evm.model.tig00021293.23 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.SWA2/NOC1 assembly factor 0.8220178259761604 34 Cpa|evm.model.tig00001416.3 0.8211611180772045 35 Cpa|evm.model.tig00000836.14 0.8185012048231677 36 Cpa|evm.model.tig00020849.36 Protein biosynthesis.translation elongation.diphthamide-modification of eEF2.DPH6 diphthamide synthetase 0.8184254559020148 37 Cpa|evm.model.tig00020961.62 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component 0.8169779185668852 38 Cpa|evm.model.tig00000113.69 0.8162769279088733 39 Cpa|evm.model.tig00000821.31 0.811044653330079 40 Cpa|evm.model.tig00020903.57 0.8099821816804588 41 Cpa|evm.model.tig00021293.22 0.8095546376331304 42 Cpa|evm.model.tig00020710.40 0.8086914152233294 43 Cpa|evm.model.tig00000076.66 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 84.5) 0.8084090601301644 44 Cpa|evm.model.tig00020812.9 0.8074887152016885 76 Cpa|evm.model.tig00020562.25 RNA processing.RNA modification.rRNA/tRNA methylation.TRM4 tRNA cytidine-methyltransferase 0.8070749275554271 46 Cpa|evm.model.tig00001071.15 RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.806348289146433 47 Cpa|evm.model.tig00000792.27 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B GYRB2 0.80601612372653 48 Cpa|evm.model.tig00000852.7 0.8060104712024607 49 Cpa|evm.model.tig00000792.35 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica 0.8032132128301716 50 Cpa|evm.model.tig00020927.23 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor EDA13, EDA19, SWA1 0.8022129416447389 51 Cpa|evm.model.tig00000137.1 0.8008553755636233 52 Cpa|evm.model.tig00001371.12 0.8002248918748179 53 Cpa|evm.model.tig00000144.191 0.7981012505824808 54 Cpa|evm.model.tig00000615.12 0.7974055953631473 55 Cpa|evm.model.tig00021127.176 0.7970790460692749 56 Cpa|evm.model.tig00020592.9 0.7947200219536448 58 Cpa|evm.model.tig00000350.47 0.7944620682606834 59 Cpa|evm.model.tig00021348.38 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana NRPA2 0.7936145950772214 60 Cpa|evm.model.tig00020941.40 Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana LCD1 0.7927023501627213 65 Cpa|evm.model.tig00022075.42 ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana tabacum FTSH5, VAR1 0.788418424011885 63 Cpa|evm.model.tig00020614.25 Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.7873096971722052 64 Cpa|evm.model.tig00000605.10 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.RRP5 assembly factor 0.7860277646054572 66 Cpa|evm.model.tig00022080.16 RNA processing.RNA decay.exosome complex.EXO9 core complex.RRP41 component RRP41 0.7855289080111139 67 Cpa|evm.model.tig00001493.9 0.7850700946264015 68 Cpa|evm.model.tig00000553.15 0.784825927233889 69 Cpa|evm.model.tig00000640.22 Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana EMB2763 0.7836059622197015 92 Cpa|evm.model.tig00001073.2 0.7820832772700905 71 Cpa|evm.model.tig00000670.6 Aminopeptidase M1-A OS=Oryza sativa subsp. japonica 0.7812269550276864 72 Cpa|evm.model.tig00000786.1 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.7812184729186678 73 Cpa|evm.model.tig00021319.3 Nucleotide metabolism.pyrimidines.ribonucleotide anabolism.carbamoyl phosphate synthetase dimer.small subunit CARB 0.7810977433619115 74 Cpa|evm.model.tig00000444.9 0.7800941803572319 75 Cpa|evm.model.tig00020878.28 0.7795036215280186 76 Cpa|evm.model.tig00000310.30 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Gar1 core component 0.7794648283169461 77 Cpa|evm.model.tig00021348.37 DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana NRPA2 0.7793562886237074 78 Cpa|evm.model.tig00001181.31 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.aminoimidazole RN carboxylase 0.7773107308006351 80 Cpa|evm.model.tig00021493.9 0.7769214945895904 100 Cpa|evm.model.tig00021070.23 0.7753268316931464 83 Cpa|evm.model.tig00000849.6 0.7748380198933952 84 Cpa|evm.model.tig00020563.150 Adenylyltransferase and sulfurtransferase MOCS3-1 OS=Zea mays SIR1, CNX5 0.7735215958912978 88 Cpa|evm.model.tig00021348.51 0.7730730386104597 89 Cpa|evm.model.tig00001001.11 RNA processing.RNA modification.rRNA/tRNA methylation.TRM5 tRNA guanosine-methyltransferase 0.7725840671084346 90 Cpa|evm.model.tig00021493.49 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) PDE319, SCA3 0.7711958131263501 92 Cpa|evm.model.tig00000237.11 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii RUP1 0.7695944095845018 93 Cpa|evm.model.tig00000880.2 0.7694109637065619 94 Cpa|evm.model.tig00000178.64 0.7689667414816695 95 Cpa|evm.model.tig00000553.10 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component CBF5, AtCBF5, NAP57, AtNAP57 0.7672997774368576 96 Cpa|evm.model.tig00020572.35 0.7672105169066484 97 Cpa|evm.model.tig00020603.85 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase 0.7669804832061081 98 Cpa|evm.model.tig00001437.7 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.formylglycinamidine RN synthase PUR4 0.7669762812482886 99