Sequence Description Alias PCC hrr Cpa|evm.model.tig00000403.78 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN8 regulatory component MEE34 0.9445092277936743 2 Cpa|evm.model.tig00000319.25 Cytoskeleton.microfilament network.actin filament protein ACT11 0.9399683946855967 2 Cpa|evm.model.tig00000980.9 Intraflagellar transport protein 25 OS=Chlamydomonas reinhardtii 0.9242147855373698 4 Cpa|evm.model.tig00021123.23 0.9146286029421645 4 Cpa|evm.model.tig00000944.21 RNA processing.RNA quality control Exon Junction complex (EJC).core components.Magoh component HAP1, MEE63, MAGO 0.9139661740840614 7 Cpa|evm.model.tig00001284.12 Coenzyme metabolism.iron-sulfur cluster assembly machineries.mitochondrial ISC system.transfer phase.HSCB chaperone component 0.9125003278751544 10 Cpa|evm.model.tig00000144.51 Protein modification.disulfide bond formation.endoplasmic reticulum.thiol-disulfide oxidoreductase (ERO) AERO2, ERO2 0.9110101220826955 7 Cpa|evm.model.tig00000718.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT4 regulatory component 0.909632928838465 41 Cpa|evm.model.tig00000615.75 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN7 regulatory component 0.9091057862063493 18 Cpa|evm.model.tig00021348.86 Translocase of chloroplast 34 OS=Pisum sativum 0.9085472086811651 10 Cpa|evm.model.tig00021464.53 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase AtRABH1e, RABH1e 0.9079666268092635 26 Cpa|evm.model.tig00000197.16 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.SKP1/ASK1 target protein binding component SK20, ASK20 0.9065993893432404 21 Cpa|evm.model.tig00020848.67 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.zeta subunit 0.9000267611905648 52 Cpa|evm.model.tig00000241.177 0.8997281689512951 14 Cpa|evm.model.tig00022075.59 Cytoskeleton.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.Arp2 component ATARP2, ARP2, WRM 0.8990872497967186 69 Cpa|evm.model.tig00021319.66 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC3/Tex1 component THO3, TEX1, AtTEX1 0.8990013680814143 55 Cpa|evm.model.tig00020903.27 Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana 0.8984150686038951 42 Cpa|evm.model.tig00000863.20 Protein modification.peptide maturation.endomembrane system.SPC endoplasmic signal peptidase complex.SEC11 catalytic component 0.8975938750637197 20 Cpa|evm.model.tig00001085.16 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB maturation.UCH1 ubiquitin carboxyl-terminal hydrolase UCH2 0.8946016370637426 21 Cpa|evm.model.tig00000241.116 0.894109800941036 22 Cpa|evm.model.tig00000704.39 Protein HEAT INTOLERANT 4 OS=Arabidopsis thaliana 0.8940703375503428 21 Cpa|evm.model.tig00000704.48 Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC3 component EMB251, RFC3, EMB161, EMB2775 0.8933615704024767 34 Cpa|evm.model.tig00020553.161 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-rhamnose synthesis.UDP-L-rhamnose synthase NRS/ER, UER1 0.8903032361013846 89 Cpa|evm.model.tig00020554.144 0.8899025077684286 24 Cpa|evm.model.tig00000073.32 Oligoribonuclease OS=Arabidopsis thaliana 0.888267936122429 25 Cpa|evm.model.tig00020553.154 0.8879102616727769 61 Cpa|evm.model.tig00000980.5 0.8876626276911026 50 Cpa|evm.model.tig00020675.94 0.8873833646893786 28 Cpa|evm.model.tig00000042.86 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.R-type SNARE longin components.SEC22-type protein ATSEC22, SEC22 0.8870809871270292 29 Cpa|evm.model.tig00000836.8 Chromatin organisation.chromatin remodeling complexes.RVB helicase component ATTIP49A, RIN1 0.8864943808470916 30 Cpa|evm.model.tig00021464.27 0.885278186913533 43 Cpa|evm.model.tig00021319.61 0.8848741268367478 44 Cpa|evm.model.tig00020903.37 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.CIP29/Tho1 component 0.884483543275936 33 Cpa|evm.model.tig00020903.15 0.8812218837548171 34 Cpa|evm.model.tig00000829.24 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component 0.8805274789450046 35 Cpa|evm.model.tig00001107.3 Secondary metabolism.terpenoids.mevalonate pathway.isopentenyl diphosphate isomerase IPP1 0.8804483855442786 45 Cpa|evm.model.tig00001098.5 Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-1 component PBA1 0.8801625957326997 37 Cpa|evm.model.tig00020909.31 Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana 0.8801134509984705 38 Cpa|evm.model.tig00000076.52 0.88000533878005 53 Cpa|evm.model.tig00001107.12 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).PRPF31 snRNP component emb1220 0.8776859786368744 88 Cpa|evm.model.tig00021312.46 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B5 component 0.8776049202851013 41 Cpa|evm.model.tig00020780.62 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD2 component PDF2 0.8775414293665508 67 Cpa|evm.model.tig00000912.28 Probable protein S-acyltransferase 23 OS=Arabidopsis thaliana TIP1 0.8774503791604474 88 Cpa|evm.model.tig00021435.47 Calmodulin OS=Mougeotia scalaris ACAM-6, CAM6 0.8773862916900494 53 Cpa|evm.model.tig00001600.14 0.8771025275064179 48 Cpa|evm.model.tig00021348.85 0.8766320526689633 46 Cpa|evm.model.tig00020553.158 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.MUS81 component MUS81, ATMUS81 0.8751230865514188 47 Cpa|evm.model.tig00000704.42 0.8751063879949086 48 Cpa|evm.model.tig00000383.54 Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.8745978708982409 49 Cpa|evm.model.tig00001107.4 Deoxyhypusine synthase OS=Senecio vernalis DHS, EDA22 0.8741953049591525 58 Cpa|evm.model.tig00000857.6 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.P23 Hsp90-co-chaperone 0.8739310921913713 54 Cpa|evm.model.tig00020918.9 0.8732451902516376 76 Cpa|evm.model.tig00000144.18 Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qb-type SNARE components.GOS group protein GOS12, ATGOS12 0.873007019690781 53 Cpa|evm.model.tig00021123.29 0.8726403615988523 54 Cpa|evm.model.tig00001073.12 13 kDa deflagellation-inducible protein OS=Chlamydomonas reinhardtii 0.871826056163198 56 Cpa|evm.model.tig00001085.3 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component RFC3, RFC5 0.8717842835390428 57 Cpa|evm.model.tig00000350.30 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor 0.871737353632037 58 Cpa|evm.model.tig00020553.157 Protein BTR1 OS=Arabidopsis thaliana 0.8716453856291531 59 Cpa|evm.model.tig00020684.43 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Bud31 component 0.870501240073488 60 Cpa|evm.model.tig00000455.19 Ras-related protein RABD2c OS=Arabidopsis thaliana RAB1C, ATRAB1C, ATRABD2C 0.8700447046551739 61 Cpa|evm.model.tig00000704.52 Protein disulfide-isomerase 2-3 OS=Arabidopsis thaliana ATPDI9, PDIL2-3, PDI9, ATPDIL2-3 0.8697775978337741 62 Cpa|evm.model.tig00001042.6 Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT2 regulatory component 0.8697681859578047 80 Cpa|evm.model.tig00020554.142 NAP1-related protein 2 OS=Oryza sativa subsp. japonica NRP2 0.8678858745784178 65 Cpa|evm.model.tig00021571.12 Protein modification.N-linked glycosylation.DPMS dolichol-phosphate-mannose synthase complex.DPMS1 catalytic component 0.8675085721495169 71 Cpa|evm.model.tig00000615.68 Ras-related protein RABA4a OS=Arabidopsis thaliana SGP1, ATSGP1 0.8655075576812116 95 Cpa|evm.model.tig00000217.26 DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.NSE4 Kleisin-like bridging component 0.8654586754712785 69 Cpa|evm.model.tig00022075.46 26S proteasome regulatory subunit 6B homolog OS=Arabidopsis thaliana RPT3 0.8642758734326124 96 Cpa|evm.model.tig00021590.4 0.8642139199680527 73 Cpa|evm.model.tig00021234.25 Cell cycle.interphase.DNA replication.initiation.GINS DNA replication fork maintenance complex.PSF1 component PSF1 0.864111133692969 74 Cpa|evm.model.tig00020848.77 0.8637706425932755 75 Cpa|evm.model.tig00021357.2 Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD4 component PFD4, AIP3 0.862837779837613 91 Cpa|evm.model.tig00020553.139 0.862044609466131 79 Cpa|evm.model.tig00000912.4 PAB7 0.8618074599124407 80 Cpa|evm.model.tig00020554.143 0.8612470178028049 81 Cpa|evm.model.tig00021319.60 0.8612319348095104 82 Cpa|evm.model.tig00001130.30 Intraflagellar transport protein 43 OS=Chlamydomonas reinhardtii 0.8610813507472944 84 Cpa|evm.model.tig00021351.15 RNA processing.RNA quality control Exon Junction complex (EJC).core components.Y14 component Y14 0.860367179851069 86 Cpa|evm.model.tig00001542.22 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN11 regulatory component 0.8602905446317103 87 Cpa|evm.model.tig00020554.31 Enzyme classification.EC_5 isomerases.EC_5.1 racemase or epimerase(50.5.1 : 388.2) & GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GME 0.8601604673517167 100 Cpa|evm.model.tig00000829.5 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA15, HDA15 0.8599403400093957 89 Cpa|evm.model.tig00021234.43 0.8588475373932485 92 Cpa|evm.model.tig00000319.24 0.8587359504670443 93 Cpa|evm.model.tig00001374.6 0.8584071503320045 94 Cpa|evm.model.tig00022075.57 Chaperone protein dnaJ 6 OS=Arabidopsis thaliana ATJ6 0.8583492458159467 95 Cpa|evm.model.tig00021433.15 0.8575902557304428 96 Cpa|evm.model.tig00021612.50 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component 0.857410897063481 97 Cpa|evm.model.tig00021352.44 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GRF10, GF14 EPSILON, 14-3-3EPSILON 0.8569057963405912 98 Cpa|evm.model.tig00021612.51 0.8568954913285844 99