Sequence Description Alias PCC hrr AT5G51110 Transcriptional coactivator/pterin dehydratase 0.9249129674147294 1 AT5G43750 NAD(P)H dehydrogenase 18 NDH18 0.8999636065960578 19 AT1G45474 photosystem I light harvesting complex gene 5 LHCA5 0.8949713984637637 14 AT3G54050 high cyclic electron flow 1 HCEF1 0.8945297139165679 27 AT2G39470 PsbP-like protein 2 PPL2 0.8934307499348139 21 AT1G74730 Protein of unknown function (DUF1118) 0.892317831890806 9 AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 FNR1, ATLFNR1 0.8906934127719316 23 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.886793654978279 11 AT4G02530 chloroplast thylakoid lumen protein 0.8845707093556565 16 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8810424393437373 10 AT3G26710 cofactor assembly of complex C CCB1 0.8808587619319372 11 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.8783157250124304 12 AT5G07020 proline-rich family protein 0.8782217777459781 18 AT1G43560 thioredoxin Y2 Aty2, ty2 0.8779785502124605 14 AT1G76450 Photosystem II reaction center PsbP family protein 0.8766750968894865 15 AT4G34190 stress enhanced protein 1 SEP1 0.8766698107352393 16 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 0.876557741640251 17 AT2G20890 photosystem II reaction center PSB29 protein PSB29, THF1 0.8741184383962747 18 AT4G21280 photosystem II subunit QA PSBQA, PSBQ-1, PSBQ 0.8727792932868287 21 AT1G32470 Single hybrid motif superfamily protein 0.8723841767870752 21 AT1G11860 Glycine cleavage T-protein family 0.8719467073094564 29 AT1G71500 Rieske (2Fe-2S) domain-containing protein 0.8718185246125384 22 AT3G55330 PsbP-like protein 1 PPL1 0.8709139206732237 23 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8700270605209061 24 AT1G50320 thioredoxin X THX, ATHX, ATX 0.8677110980462847 25 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit GAPB 0.8675670008132642 36 AT1G09340 chloroplast RNA binding CRB, HIP1.3, CSP41B 0.8667443674422373 41 AT1G54500 Rubredoxin-like superfamily protein 0.8658943164293712 28 AT2G35370 glycine decarboxylase complex H GDCH 0.8647223219875698 29 AT3G55800 sedoheptulose-bisphosphatase SBPASE 0.8638407954352062 47 AT1G70760 inorganic carbon transport protein-related CRR23 0.8622789259322629 31 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein 0.8619217635504397 32 AT3G54210 Ribosomal protein L17 family protein 0.8618827874543558 33 AT5G16710 dehydroascorbate reductase 1 DHAR3 0.8617272043296774 34 AT5G45680 FK506-binding protein 13 ATFKBP13, FKBP13 0.8606260277101527 35 AT1G64770 NDH-dependent cyclic electron flow 1 NDH45, NDF2 0.8586558655088765 36 AT1G44575 Chlorophyll A-B binding family protein NPQ4, PSBS 0.8585748496780822 37 AT1G04420 NAD(P)-linked oxidoreductase superfamily protein 0.8568561217545451 38 AT3G12345 unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 0.8567981034940619 39 AT5G23120 photosystem II stability/assembly factor, chloroplast (HCF136) HCF136 0.8566493974582767 40 AT2G21960 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 0.8557845977941457 41 AT3G59780 Rhodanese/Cell cycle control phosphatase superfamily protein 0.8557443895931228 42 AT4G39710 FK506-binding protein 16-2 FKBP16-2 0.8553209726561548 43 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.8537083603944557 44 AT3G02730 thioredoxin F-type 1 ATF1, TRXF1 0.8532555421324329 45 AT3G46780 plastid transcriptionally active 16 PTAC16 0.853223980807765 46 AT2G01590 chlororespiratory reduction 3 CRR3 0.852798728436501 47 AT2G30170 Protein phosphatase 2C family protein 0.8525766388166649 48 AT3G62030 rotamase CYP 4 ROC4 0.8518287629656092 49 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8515963415770834 50 AT4G09650 ATP synthase delta-subunit gene ATPD 0.8515799618256723 51 AT3G48420 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8506405222363441 52 AT2G41680 NADPH-dependent thioredoxin reductase C NTRC 0.8504327347804059 53 AT1G04640 lipoyltransferase 2 LIP2 0.8501170378364022 54 AT4G18370 DEGP protease 5 HHOA, DEG5, DEGP5 0.8498310536840864 55 AT5G08050 Protein of unknown function (DUF1118) 0.849732254522854 56 AT1G20340 Cupredoxin superfamily protein DRT112, PETE2 0.8495888082129265 57 AT1G18730 NDH dependent flow 6 NDF6 0.8492649394121932 58 AT1G73060 Low PSII Accumulation 3 LPA3 0.8492014993238892 59 AT5G20140 SOUL heme-binding family protein 0.8486564219067142 60 AT1G50450 Saccharopine dehydrogenase 0.8484945192811171 61 AT1G15980 NDH-dependent cyclic electron flow 1 NDH48, NDF1 0.8478145756387478 62 AT2G48070 resistance to phytophthora 1 RPH1 0.8474444778778981 63 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8471268005410016 64 AT5G36700 2-phosphoglycolate phosphatase 1 PGLP1, ATPGLP1 0.8471268005410016 65 AT1G65230 Uncharacterized conserved protein (DUF2358) 0.8466671128546829 66 AT5G06290 2-cysteine peroxiredoxin B 2CPB, 2-Cys Prx B 0.8456253449754176 67 AT4G03280 photosynthetic electron transfer C PGR1, PETC 0.8455351656518856 68 AT1G12900 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 GAPA-2 0.8453005707451696 69 AT4G13500 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8450692549961908 70 AT4G10300 RmlC-like cupins superfamily protein 0.842942614610715 71 AT4G20360 RAB GTPase homolog E1B ATRAB8D, ATRABE1B, RABE1b 0.8427957588978395 72 AT3G12780 phosphoglycerate kinase 1 PGK1 0.8427281984400283 73 AT3G61870 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). 0.8426873884870721 74 AT5G30510 ribosomal protein S1 RPS1, ARRPS1 0.8422767231616588 75 AT1G51110 Plastid-lipid associated protein PAP / fibrillin family protein 0.8422446286585944 76 AT1G32080 membrane protein, putative 0.8421827871958365 77 AT4G22830 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 0.8420969117323199 78 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 0.8419782427743765 79 AT2G28605 Photosystem II reaction center PsbP family protein 0.8417815149664415 80 AT5G40950 ribosomal protein large subunit 27 RPL27 0.8416511729885889 81 AT2G21530 SMAD/FHA domain-containing protein 0.8411640700310559 82 AT1G77090 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 0.8405435579885103 83 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.8400279807829849 84 AT4G09010 ascorbate peroxidase 4 APX4, TL29 0.8397084198610603 85 AT4G21210 PPDK regulatory protein ATRP1, RP1 0.8395753949608735 86 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.8395234986608467 87 AT3G63140 chloroplast stem-loop binding protein of 41 kDa CSP41A 0.8387041212008902 88 AT1G19150 photosystem I light harvesting complex gene 6 LHCA2*1, LHCA6 0.8377367980276987 89 AT1G50900 Ankyrin repeat family protein GDC1 0.837567874275242 90 AT1G55480 protein containing PDZ domain, a K-box domain, and a TPR region ZKT 0.8367311557342378 91 AT5G21430 Chaperone DnaJ-domain superfamily protein 0.8364978583836092 92 AT1G67090 ribulose bisphosphate carboxylase small chain 1A RBCS1A 0.8353958334492411 93 AT1G03680 thioredoxin M-type 1 ATHM1, THM1, TRX-M1, ATM1 0.8353282803428053 94 AT1G77490 thylakoidal ascorbate peroxidase TAPX 0.832903524714354 95 AT3G01480 cyclophilin 38 ATCYP38, CYP38 0.8320709666428886 96 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related protein 0.8314401040546117 97 AT5G09660 peroxisomal NAD-malate dehydrogenase 2 PMDH2 0.8312551898778066 98 AT5G08650 Small GTP-binding protein 0.8310334891080005 99 AT1G03630 protochlorophyllide oxidoreductase C POR C, PORC 0.8306183535074309 100