Sequence Description Alias PCC hrr AMTR_s00106p00133350 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component evm_27.TU.AmTr_v1.0_scaffold00106.104 0.9481263339066621 3 AMTR_s00007p00201600 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.177 0.9450567058435618 6 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14, evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9421707986625307 10 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor AHK2, HK2, evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9421427374007986 7 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1 0.9421330995757787 5 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9418640647381586 20 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9378410324948416 16 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9375842547767861 8 AMTR_s00078p00192630 evm_27.TU.AmTr_v1.0_scaffold00078.201 0.9360940120337241 9 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2, evm_27.TU.AmTr_v1.0_scaffold00029.74 0.9360575708038785 10 AMTR_s00079p00078710 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00079.26 0.9335239282847742 11 AMTR_s00013p00152000 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GRV2, KAM2, evm_27.TU.AmTr_v1.0_scaffold00013.78 0.9330493684776213 12 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139 0.931019393453908 15 AMTR_s00059p00138250 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG7 ATG8/12-activating E1 protein ATAPG7, APG7, ATG7, ATATG7, evm_27.TU.AmTr_v1.0_scaffold00059.120 0.9306529299396579 14 AMTR_s00198p00028070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component GCT, evm_27.TU.AmTr_v1.0_scaffold00198.5 0.9304152381886638 15 AMTR_s00268p00016240 Protein modification.phosphorylation.atypical kinase families.PIKK kinase evm_27.TU.AmTr_v1.0_scaffold00268.6 0.9289462108533252 16 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9282292412813962 28 AMTR_s00173p00060580 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00173.16 0.9268229583129476 26 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 NRPC2, evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9262330696130096 26 AMTR_s00060p00033670 Multi-process regulation.TOR signalling pathway.TORC complex.TOR kinase component TOR, evm_27.TU.AmTr_v1.0_scaffold00060.9 0.9248771930611641 24 AMTR_s00061p00131900 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS, evm_27.TU.AmTr_v1.0_scaffold00061.110 0.9246530320321704 22 AMTR_s00002p00260810 DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.446 0.9241003393627744 23 AMTR_s00009p00267690 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase ATCPL1, CPL1, FRY2, evm_27.TU.AmTr_v1.0_scaffold00009.409 0.9239246772152129 24 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2, evm_27.TU.AmTr_v1.0_scaffold00138.19 0.9234948060306514 42 AMTR_s00033p00059780 Protein modification.lipidation.Cys-linked S-acylation.protein S-acyltransferase TIP1, evm_27.TU.AmTr_v1.0_scaffold00033.26 0.9229565499784824 26 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9228949481956662 33 AMTR_s00110p00146400 DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.121 0.9205347304249973 38 AMTR_s00066p00174610 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component ATRAD21.3, SYN4, evm_27.TU.AmTr_v1.0_scaffold00066.206 0.9202115127893384 29 AMTR_s00142p00090900 emb2410, evm_27.TU.AmTr_v1.0_scaffold00142.59 0.9163495063399819 31 AMTR_s00007p00263470 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.340 0.9160685523939753 32 AMTR_s00060p00196600 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component evm_27.TU.AmTr_v1.0_scaffold00060.141 0.9158118698724805 80 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.9156027721889471 43 AMTR_s00027p00205150 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00027.73 0.9139632371367093 36 AMTR_s00089p00070210 Pentatricopeptide repeat-containing protein At5g15280, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00089.28 0.9128092618752217 37 AMTR_s00017p00141460 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.DMI1/Pollux/Castor calcium cation channel evm_27.TU.AmTr_v1.0_scaffold00017.65 0.912632999697613 40 AMTR_s01224p00002240 evm_27.TU.AmTr_v1.0_scaffold01224.1 0.9124280452791782 39 AMTR_s00048p00066880 Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana NHL8, evm_27.TU.AmTr_v1.0_scaffold00048.27 0.9122752292441155 40 AMTR_s00009p00253500 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.266 0.9121426707628224 98 AMTR_s00059p00199900 Protein modification.phosphorylation.atypical kinase families.PIKK kinase TOR, evm_27.TU.AmTr_v1.0_scaffold00059.222 0.9119876358028601 42 AMTR_s00048p00233710 evm_27.TU.AmTr_v1.0_scaffold00048.233 0.9099398785607363 48 AMTR_s00058p00137050 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HOX-like transcription factor evm_27.TU.AmTr_v1.0_scaffold00058.101 0.9099341588657205 44 AMTR_s00090p00148990 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor SYD, CHR3, evm_27.TU.AmTr_v1.0_scaffold00090.83 0.9093722310450341 45 AMTR_s00041p00031550 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor evm_27.TU.AmTr_v1.0_scaffold00041.15 0.9091116434953618 46 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component ESP4, evm_27.TU.AmTr_v1.0_scaffold00007.52 0.9089836424535302 100 AMTR_s00003p00269470 evm_27.TU.AmTr_v1.0_scaffold00003.408 0.9083641832570225 49 AMTR_s00078p00109260 evm_27.TU.AmTr_v1.0_scaffold00078.82 0.9078668298570512 50 AMTR_s00048p00149840 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.102 0.9077672490835047 70 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor LUG, RON2, evm_27.TU.AmTr_v1.0_scaffold00122.38 0.9069358605194715 85 AMTR_s00086p00132870 evm_27.TU.AmTr_v1.0_scaffold00086.75 0.9067065438442241 53 AMTR_s00040p00228310 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP2A large alpha subunit alpha-ADR, evm_27.TU.AmTr_v1.0_scaffold00040.272 0.9066236097326981 54 AMTR_s00066p00129430 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00066.122 0.9063403453314864 100 AMTR_s00055p00165140 Protein modification.N-linked glycosylation.complex N-glycan maturation.beta-1,2-xylosyltransferase XYLT, ATXYLT, evm_27.TU.AmTr_v1.0_scaffold00055.85 0.905976753489547 56 AMTR_s00009p00067490 Pumilio homolog 1 OS=Arabidopsis thaliana PUM1, APUM1, evm_27.TU.AmTr_v1.0_scaffold00009.20 0.9055387692098197 58 AMTR_s00033p00211330 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1, evm_27.TU.AmTr_v1.0_scaffold00033.185 0.9053952997079765 59 AMTR_s00069p00119460 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana SLK2, evm_27.TU.AmTr_v1.0_scaffold00069.80 0.9050729444602233 79 AMTR_s00059p00210260 evm_27.TU.AmTr_v1.0_scaffold00059.244 0.9047175430444799 61 AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9045362870222862 90 AMTR_s00002p00269880 Nutrient uptake.sulfur assimilation.sulfate assimilation.sulfite reductase SIR, evm_27.TU.AmTr_v1.0_scaffold00002.562 0.9042465805291996 64 AMTR_s00016p00255950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00016.338 0.9039720642555779 72 AMTR_s00001p00229100 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component CSTF64, evm_27.TU.AmTr_v1.0_scaffold00001.240 0.9033183878067276 67 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase HERK1, evm_27.TU.AmTr_v1.0_scaffold00080.56 0.9032481714799802 69 AMTR_s00020p00187990 evm_27.TU.AmTr_v1.0_scaffold00020.72 0.9029440729996788 70 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.9028963681267893 71 AMTR_s00078p00132750 Protein modification.phosphorylation.atypical kinase families.TAF kinase HAF01, HAC13, TAF1, HAF1, GTD1, evm_27.TU.AmTr_v1.0_scaffold00078.111 0.90190551066081 73 AMTR_s00068p00177220 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDK9 kinase evm_27.TU.AmTr_v1.0_scaffold00068.133 0.9009029116829579 78 AMTR_s00078p00187540 Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana EMB2745, evm_27.TU.AmTr_v1.0_scaffold00078.193 0.9007510516350167 75 AMTR_s00071p00142490 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).UPF1 effector protein UPF1, ATUPF1, LBA1, evm_27.TU.AmTr_v1.0_scaffold00071.128 0.9006248255208408 76 AMTR_s00145p00081540 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase guanine nucleotide exchange factor (RAB-GEF) activities.MON1-CCZ1 RAB7 guanine nucleotide exchange factor complex.MON1/SAND component evm_27.TU.AmTr_v1.0_scaffold00145.30 0.899748403400354 79 AMTR_s00022p00020890 evm_27.TU.AmTr_v1.0_scaffold00022.6 0.8992169833801347 91 AMTR_s00037p00128200 evm_27.TU.AmTr_v1.0_scaffold00037.54 0.8971422976927419 83 AMTR_s00110p00115240 External stimuli response.biotic stress.pathogen effector.NLR effector receptor 0.8966005001199142 86 AMTR_s00067p00089960 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.66 0.8964089841926094 87 AMTR_s00078p00055040 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase SDE1, RDR6, SGS2, evm_27.TU.AmTr_v1.0_scaffold00078.28 0.8960952462504922 90 AMTR_s00061p00084390 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component evm_27.TU.AmTr_v1.0_scaffold00061.60 0.8959128948185804 91 AMTR_s00004p00023800 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase ATEDR1, EDR1, evm_27.TU.AmTr_v1.0_scaffold00004.8 0.8958615198174616 92 AMTR_s00006p00248360 Phytohormones.auxin.transport.polar auxin transport.BIG regulator protein DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG, evm_27.TU.AmTr_v1.0_scaffold00006.138 0.8956785602623296 93 AMTR_s00048p00175550 NOV, evm_27.TU.AmTr_v1.0_scaffold00048.130 0.8953379297863854 94 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel GLR3.3, ATGLR3.3, evm_27.TU.AmTr_v1.0_scaffold00044.128 0.8951280863227868 95 AMTR_s00020p00134590 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IPO8 import karyopherin SAD2, URM9, evm_27.TU.AmTr_v1.0_scaffold00020.48 0.8949406305278912 96 AMTR_s00029p00083380 evm_27.TU.AmTr_v1.0_scaffold00029.77 0.8942890897128798 98 AMTR_s00025p00184490 evm_27.TU.AmTr_v1.0_scaffold00025.223 0.8941219736535572 99