Sequence Description Alias PCC hrr AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9459471044635392 9 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.9237611335256808 7 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component CcdA, evm_27.TU.AmTr_v1.0_scaffold00061.187 0.9228247490225647 17 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9219542148945531 24 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.9200261389160722 11 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana RPS5, evm_27.TU.AmTr_v1.0_scaffold00029.137 0.9183850242324803 15 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.9155560580003985 17 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9136671357357833 32 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9131773462605648 41 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B, evm_27.TU.AmTr_v1.0_scaffold00003.202 0.912509976175803 24 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9105268347072686 30 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component PGR5-LIKE A, evm_27.TU.AmTr_v1.0_scaffold00001.191 0.9100744248172402 30 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9099163854677844 49 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC, evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9093210056257938 47 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase STN8, evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9091260386129828 18 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9089747857193529 27 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase FNR1, ATLFNR1, evm_27.TU.AmTr_v1.0_scaffold00016.69 0.908927360725547 71 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9076970247827929 22 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein TLP18.3, evm_27.TU.AmTr_v1.0_scaffold00025.118 0.9049225302732176 59 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.9024902475886999 26 AMTR_s00063p00191490 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase GLU1, FD-GOGAT, GLS1, GLUS, evm_27.TU.AmTr_v1.0_scaffold00063.73 0.9014565564372756 21 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9006087239119306 74 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9001853645942873 65 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component PTAC16, evm_27.TU.AmTr_v1.0_scaffold00012.301 0.8997471644434973 84 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8986546400585623 42 AMTR_s00109p00047950 Solute transport.carrier-mediated transport.TOC superfamily.TSUP transport protein evm_27.TU.AmTr_v1.0_scaffold00109.34 0.897686401359208 26 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.8965763060161442 81 AMTR_s00029p00134700 PSBQ-2, PSII-Q, PSBQ, evm_27.TU.AmTr_v1.0_scaffold00029.153 0.8947357308568582 28 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8945651224481497 29 AMTR_s00025p00060270 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor evm_27.TU.AmTr_v1.0_scaffold00025.37 0.8929098854523314 30 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8917483890704758 31 AMTR_s00008p00223050 Protein OBERON 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.141 0.8915316417529496 32 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.891111611001336 68 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8906978745521739 34 AMTR_s00095p00031150 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.12 0.8903279256377696 35 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor emb1138, evm_27.TU.AmTr_v1.0_scaffold00003.145 0.8900707528081631 88 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase PGK1, evm_27.TU.AmTr_v1.0_scaffold00062.192 0.88959582763796 85 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component HCF101, evm_27.TU.AmTr_v1.0_scaffold00142.34 0.8892232272038667 77 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase ADG1, APS1, evm_27.TU.AmTr_v1.0_scaffold00061.96 0.8871808126878624 58 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.8868940566463904 80 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor KCA2, KAC2, evm_27.TU.AmTr_v1.0_scaffold00002.13 0.8867511912866505 41 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase PRK, evm_27.TU.AmTr_v1.0_scaffold00048.87 0.884534245508673 50 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8841880666892292 51 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase CYP97C1, LUT1, evm_27.TU.AmTr_v1.0_scaffold00001.484 0.8837476958727194 65 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8832232023595137 47 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.8823132040335802 59 AMTR_s00009p00227360 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR2, PHT4;4, evm_27.TU.AmTr_v1.0_scaffold00009.177 0.8822733751364064 48 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.8795394087878476 50 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter ANTR2, PHT4;4, evm_27.TU.AmTr_v1.0_scaffold00029.352 0.8795350773099313 74 AMTR_s00055p00172380 evm_27.TU.AmTr_v1.0_scaffold00055.89 0.87943611770244 52 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase HPR, ATHPR1, evm_27.TU.AmTr_v1.0_scaffold00152.29 0.8789170901760825 91 AMTR_s00096p00137440 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.monodehydroascorbate reductase (MDAR) ATMDAR4, MDAR4, evm_27.TU.AmTr_v1.0_scaffold00096.88 0.8786925397946656 54 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase ABA1, IBS3, ATABA1, ZEP, NPQ2, LOS6, ATZEP, evm_27.TU.AmTr_v1.0_scaffold00076.7 0.877717570358883 55 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8773005048438768 56 AMTR_s00058p00182650 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00058.174 0.8771910248376851 64 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.877117385800593 89 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana ATAB2, evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8770879800099579 84 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component CCB4, evm_27.TU.AmTr_v1.0_scaffold00028.110 0.876888518748924 60 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.8766906365873546 69 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8764676891982958 92 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase FC-II, FC2, ATFC-II, evm_27.TU.AmTr_v1.0_scaffold00060.3 0.8761676914617138 63 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 NDF5, evm_27.TU.AmTr_v1.0_scaffold00004.63 0.8761484402913345 94 AMTR_s00115p00066030 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR41 evm_27.TU.AmTr_v1.0_scaffold00115.4 0.8752980685504734 66 AMTR_s00046p00219150 Photosynthesis.photorespiration.serine hydroxymethyltransferase STM, SHM1, SHMT1, evm_27.TU.AmTr_v1.0_scaffold00046.151 0.8752439872563204 67 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component NDH48, NDF1, evm_27.TU.AmTr_v1.0_scaffold00065.208 0.8746535294380697 69 AMTR_s00030p00229610 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.182 0.8743723033554226 70 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.8724585100186658 72 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana PDE322, CP33, evm_27.TU.AmTr_v1.0_scaffold00061.6 0.8724495024733598 84 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein DRP5B, ARC5, evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8723775505060883 78 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase RLK, evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8721035397067897 75 AMTR_s00030p00231690 evm_27.TU.AmTr_v1.0_scaffold00030.187 0.8719293960907842 76 AMTR_s00012p00241210 Uncharacterized protein At5g02240 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.216 0.8717898999245164 78 AMTR_s00104p00098970 PIFI, evm_27.TU.AmTr_v1.0_scaffold00104.36 0.8714959147625715 80 AMTR_s00109p00109760 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.104 0.8709851693276381 81 AMTR_s00009p00232920 evm_27.TU.AmTr_v1.0_scaffold00009.186 0.8705739423090214 83 AMTR_s00038p00072170 Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.31 0.8702020198387564 84 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase ATLIP1, LIP1, evm_27.TU.AmTr_v1.0_scaffold00167.23 0.8701471025505382 85 AMTR_s00025p00156240 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor CIA2, evm_27.TU.AmTr_v1.0_scaffold00025.176 0.8694931868284728 86 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) TZ, THI4, THI1, evm_27.TU.AmTr_v1.0_scaffold00005.125 0.8692412864762397 87 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component CRR23, evm_27.TU.AmTr_v1.0_scaffold00010.88 0.8686644968955174 88 AMTR_s00001p00069110 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.44 0.8684251597529721 89 AMTR_s00019p00118960 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic55 component TIC55-II, evm_27.TU.AmTr_v1.0_scaffold00019.95 0.8680011299439588 92 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CSP41A, evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8664827324746203 99 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.86604618677916 98 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.8656157445401299 99 AMTR_s00065p00176540 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase ALDH11A3, evm_27.TU.AmTr_v1.0_scaffold00065.146 0.8652801983996283 100