Sequence Description Alias PCC hrr AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.935402664733045 4 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9261446509272299 15 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9240006643379209 9 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.9176166432211831 9 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.9172977449115861 9 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9169553619919509 21 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9163484239675521 26 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase ISE2, PDE317, EMB25, evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9154828975905162 28 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9144867656664671 16 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.9131236225617156 14 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component ATCAF1, CAF1, evm_27.TU.AmTr_v1.0_scaffold00056.26 0.9111475612411994 14 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.9109063444591895 12 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.910779426871678 16 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase SQD1, evm_27.TU.AmTr_v1.0_scaffold00101.37 0.9106847144787688 14 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.9086533601532307 15 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component CCB1, evm_27.TU.AmTr_v1.0_scaffold00016.38 0.9080256077434319 28 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana RFL1, evm_27.TU.AmTr_v1.0_scaffold00203.3 0.9057469610370295 17 AMTR_s00068p00127460 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52, evm_27.TU.AmTr_v1.0_scaffold00068.87 0.9048202887500131 18 AMTR_s00099p00074160 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.55 0.904751181738 19 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.9043917927897245 20 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.9039155924685092 27 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9030899447635871 49 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.9027646787333626 23 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase AMY3, ATAMY3, evm_27.TU.AmTr_v1.0_scaffold00078.76 0.9017184246908923 27 AMTR_s00048p00085290 Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris evm_27.TU.AmTr_v1.0_scaffold00048.41 0.9011644727183059 25 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component VAR2, FTSH2, evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9007481157264233 40 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana CRR22, evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9002977724699306 31 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9001838229924057 50 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.9001745620071686 44 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.9000643957646787 30 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.899835419121947 31 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter MEX1, RCP1, evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8984845006517608 32 AMTR_s00067p00038470 CJD1, evm_27.TU.AmTr_v1.0_scaffold00067.21 0.898339718983913 33 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.8981211120258545 83 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor FLN2, evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8978898584052963 71 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.8978311099975393 36 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.8971719861638562 37 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8970181007648153 46 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.8966772822446117 39 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.8964070240953165 49 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.896352259664018 73 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8954700442105222 42 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.8950270171325391 43 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8949759414451801 44 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP97B3, evm_27.TU.AmTr_v1.0_scaffold00042.72 0.8938163883566588 99 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90 0.8937859662055668 47 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.8937568361944305 48 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component ftsh9, evm_27.TU.AmTr_v1.0_scaffold00029.331 0.8933867269661931 49 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase SRT2, AtSRT2, evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8930967934256856 50 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.8928651318947946 51 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8920590006971181 52 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.8911651967176745 63 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase GGAT1, GGT1, AOAT1, evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8881585683198694 55 AMTR_s00101p00049040 evm_27.TU.AmTr_v1.0_scaffold00101.20 0.8881289593782412 56 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8863763560888237 58 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.8849331464617063 87 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8841969444427358 92 AMTR_s00031p00080280 Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.31 0.8841787959592605 61 AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL, evm_27.TU.AmTr_v1.0_scaffold00015.112 0.883949323718964 62 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.8838051426505595 86 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.8811150070149343 98 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor ATWHY1, WHY1, PTAC1, evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8808561582791412 69 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8807302092279037 68 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8806873372347557 88 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.8800897510231301 70 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.8794254131415417 93 AMTR_s00011p00231930 Pheophytinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.113 0.8793815791461755 72 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.8791168204187437 73 AMTR_s00024p00200150 YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana YLMG1-2, ATYLMG1-2, evm_27.TU.AmTr_v1.0_scaffold00024.175 0.8789537745373327 74 AMTR_s00011p00136520 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP8/TAC6 component PTAC6, evm_27.TU.AmTr_v1.0_scaffold00011.39 0.8781431213579161 76 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) GR, EMB2360, ATGR2, evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8777372210977501 88 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.877444509080123 78 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.8773180934454116 79 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase FC-II, FC2, ATFC-II, evm_27.TU.AmTr_v1.0_scaffold00060.3 0.8768649454634964 81 AMTR_s00149p00064300 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase BGLU12, evm_27.TU.AmTr_v1.0_scaffold00149.41 0.8738760112321393 88 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase LYC, evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8736903542705244 89 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor ATCFM3A, CFM3A, evm_27.TU.AmTr_v1.0_scaffold00002.494 0.8731741326913027 92 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase IM1, IM, evm_27.TU.AmTr_v1.0_scaffold00074.38 0.873166000317719 93 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA, evm_27.TU.AmTr_v1.0_scaffold00006.223 0.8728043387950705 94 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.8725553919439679 95 AMTR_s00022p00253450 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase ATCCD1, CCD1, NCED1, ATNCED1, evm_27.TU.AmTr_v1.0_scaffold00022.400 0.8724814778556521 97 AMTR_s00001p00161700 evm_27.TU.AmTr_v1.0_scaffold00001.148 0.8723091554687493 98 AMTR_s00032p00093370 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00032.59 0.8722654108497236 99 AMTR_s00065p00179810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB4, CLPB-M, HSP98.7, evm_27.TU.AmTr_v1.0_scaffold00065.151 0.8719703670263313 100