Sequence Description Alias PCC hrr AMTR_s00020p00234520 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323, evm_27.TU.AmTr_v1.0_scaffold00020.106 0.9599159617909953 1 AMTR_s00029p00206820 RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component evm_27.TU.AmTr_v1.0_scaffold00029.298 0.9594002494527876 2 AMTR_s00009p00184050 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) ATPARP2, PARP2, evm_27.TU.AmTr_v1.0_scaffold00009.114 0.9589792917118195 3 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component EMB1265, ATCPSF100, CPSF100, ESP5, evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9554446283696283 4 AMTR_s00049p00191680 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.GP210 nucleoporin EMB3012, evm_27.TU.AmTr_v1.0_scaffold00049.202 0.9473195049258889 5 AMTR_s00128p00114010 Acylamino-acid-releasing enzyme 1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00128.43 0.9463572125927595 6 AMTR_s00110p00131760 Solute transport.primary active transport.P-type ATPase superfamily.P5 family.MIA P5-type cation-transporting ATPase PDR2, MIA, evm_27.TU.AmTr_v1.0_scaffold00110.106 0.946124940774024 7 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OEP80, EMB213, TOC75, ATOEP80, evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9423147947386089 11 AMTR_s00020p00038010 Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00020.9 0.9418733049643436 28 AMTR_s00104p00054580 Vesicle trafficking.endomembrane trafficking.post-Golgi trafficking.SCD complex.SCD1 protein SCD1, evm_27.TU.AmTr_v1.0_scaffold00104.16 0.9415144039719507 11 AMTR_s00027p00246350 Chaperone protein dnaJ GFA2, mitochondrial OS=Arabidopsis thaliana GFA2, evm_27.TU.AmTr_v1.0_scaffold00027.153 0.9408692474987769 11 AMTR_s00087p00144100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00087.47 0.940827593037913 12 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9386606513868715 13 AMTR_s00092p00157140 evm_27.TU.AmTr_v1.0_scaffold00092.133 0.9383469847970382 17 AMTR_s00101p00130320 Cytoskeleton.microfilament network.actin organisation.SCAB regulator protein evm_27.TU.AmTr_v1.0_scaffold00101.104 0.9380882431705123 15 AMTR_s00085p00089520 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component SRCAP, PIE1, chr13, evm_27.TU.AmTr_v1.0_scaffold00085.48 0.9377507899395328 16 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.9376281474007309 17 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9370871473560148 43 AMTR_s00092p00062310 Coenzyme metabolism.NAD/NADP biosynthesis.NAD synthase evm_27.TU.AmTr_v1.0_scaffold00092.27 0.9367461591175973 19 AMTR_s00119p00132020 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class IV ARF-GAP protein ZIGA4, AGD14, evm_27.TU.AmTr_v1.0_scaffold00119.107 0.9362529536638131 23 AMTR_s00036p00170130 Nudix hydrolase 3 OS=Arabidopsis thaliana atnudt3, NUDT3, evm_27.TU.AmTr_v1.0_scaffold00036.84 0.9359184811464868 21 AMTR_s00101p00142180 evm_27.TU.AmTr_v1.0_scaffold00101.118 0.9338630628364586 40 AMTR_s00009p00260060 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA2, KEA2, evm_27.TU.AmTr_v1.0_scaffold00009.318 0.9338205055143117 23 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2, evm_27.TU.AmTr_v1.0_scaffold00138.19 0.9334428098437255 24 AMTR_s00003p00233250 evm_27.TU.AmTr_v1.0_scaffold00003.233 0.9329967326769941 25 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9327206092030433 26 AMTR_s00014p00034060 Cell wall.callose.callose synthase GSL04, atgsl4, gsl04, ATGSL04, evm_27.TU.AmTr_v1.0_scaffold00014.10 0.929788220958948 41 AMTR_s00025p00221910 External stimuli response.drought.stomatal closure signalling.CAU1 histone methylase ATPRMT5, PRMT5, SKB1, evm_27.TU.AmTr_v1.0_scaffold00025.311 0.9292443538335737 28 AMTR_s00025p00188660 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) evm_27.TU.AmTr_v1.0_scaffold00025.230 0.9291124290107967 43 AMTR_s00029p00113670 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component evm_27.TU.AmTr_v1.0_scaffold00029.124 0.9288827406142578 39 AMTR_s00002p00118630 evm_27.TU.AmTr_v1.0_scaffold00002.74 0.9285914806219712 32 AMTR_s00069p00133460 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana SMU1, evm_27.TU.AmTr_v1.0_scaffold00069.97 0.9285096793052535 32 AMTR_s00104p00047720 Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.13 0.927036632076502 33 AMTR_s00030p00239430 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.208 0.9263403968159843 34 AMTR_s00029p00102340 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein ATPRP40C, PRP40C, evm_27.TU.AmTr_v1.0_scaffold00029.99 0.9257089610723304 35 AMTR_s00061p00196410 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond LACS8, evm_27.TU.AmTr_v1.0_scaffold00061.230 0.9252214569558218 36 AMTR_s00003p00052150 evm_27.TU.AmTr_v1.0_scaffold00003.32 0.9252061851151911 41 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9246827119612717 55 AMTR_s00028p00075270 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor PRZ1, ADA2B, evm_27.TU.AmTr_v1.0_scaffold00028.18 0.9242644597415897 39 AMTR_s00122p00126300 evm_27.TU.AmTr_v1.0_scaffold00122.63 0.9234644567232876 40 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana emb2004, evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9233002809386547 50 AMTR_s00016p00133200 evm_27.TU.AmTr_v1.0_scaffold00016.91 0.9230409659005934 56 AMTR_s00016p00180540 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component evm_27.TU.AmTr_v1.0_scaffold00016.142 0.9230266351900216 82 AMTR_s00102p00018040 DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1) ATLIG1, LIG1, evm_27.TU.AmTr_v1.0_scaffold00102.3 0.922840068697982 44 AMTR_s00012p00135630 Protein modification.phosphorylation.atypical kinase families.RIO kinase evm_27.TU.AmTr_v1.0_scaffold00012.69 0.9228214710982426 45 AMTR_s00014p00128310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase evm_27.TU.AmTr_v1.0_scaffold00014.46 0.9227187888461552 46 AMTR_s00092p00123760 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS53/HIT1 component VPS53, HIT1, ATVPS53, evm_27.TU.AmTr_v1.0_scaffold00092.88 0.9225185841523943 47 AMTR_s00039p00148640 Cell cycle.cytokinesis.preprophase microtubule organization.CLASP microtubule orientation regulator ATCLASP, CLASP, evm_27.TU.AmTr_v1.0_scaffold00039.100 0.9222008497737786 81 AMTR_s00115p00126760 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor HUA1, evm_27.TU.AmTr_v1.0_scaffold00115.20 0.9218459719840498 49 AMTR_s00057p00185220 Probable serine/threonine-protein phosphatase 2A regulatory subunit B subunit TON2 OS=Arabidopsis thaliana GDO, FASS 2, EMB40, TON2, FASS, FS1, evm_27.TU.AmTr_v1.0_scaffold00057.200 0.921733092156817 50 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9211782188190272 51 AMTR_s00101p00117720 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2B eIF2-GDP recycling complex.eIF2B-gamma evm_27.TU.AmTr_v1.0_scaffold00101.91 0.9211185936148562 52 AMTR_s00082p00059940 Protein RST1 OS=Arabidopsis thaliana RST1, evm_27.TU.AmTr_v1.0_scaffold00082.4 0.9210997437594318 67 AMTR_s00066p00041260 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.18 0.9208179866046101 76 AMTR_s00033p00224700 BEACH domain-containing protein B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.211 0.9207895302039673 79 AMTR_s00002p00079350 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component EMB2016, evm_27.TU.AmTr_v1.0_scaffold00002.39 0.9207257809514222 56 AMTR_s00004p00135010 Cold shock protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.130 0.9206338673817938 57 AMTR_s00182p00037730 Cell cycle.organelle machineries.organelle fission.plastid division.ARC6 FtsZ assembly regulator ARC6, evm_27.TU.AmTr_v1.0_scaffold00182.17 0.9203794524480164 58 AMTR_s00044p00098420 Cell wall.callose.callose synthase gsl12, ATGSL12, evm_27.TU.AmTr_v1.0_scaffold00044.69 0.9203241545788109 85 AMTR_s00027p00246570 Chaperone protein dnaJ GFA2, mitochondrial OS=Arabidopsis thaliana GFA2, evm_27.TU.AmTr_v1.0_scaffold00027.154 0.9199287498031243 60 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component RPN1A, ATRPN1A, evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9196747171924122 61 AMTR_s00067p00142170 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate synthase HISN4, AT-HF, evm_27.TU.AmTr_v1.0_scaffold00067.132 0.9195903246517718 62 AMTR_s00106p00107190 evm_27.TU.AmTr_v1.0_scaffold00106.78 0.91933056510885 63 AMTR_s00095p00045160 Protein unc-13 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.22 0.9185570886647556 64 AMTR_s00009p00244590 evm_27.TU.AmTr_v1.0_scaffold00009.231 0.9185012532847916 65 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9184051444780458 66 AMTR_s00026p00039130 evm_27.TU.AmTr_v1.0_scaffold00026.13 0.9181752458438546 67 AMTR_s00110p00154620 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana emb2458, evm_27.TU.AmTr_v1.0_scaffold00110.130 0.9180778395419016 84 AMTR_s00099p00147110 EMB140, evm_27.TU.AmTr_v1.0_scaffold00099.133 0.9178835099024634 69 AMTR_s00088p00153240 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00088.123 0.9178729884157957 70 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component ESP4, evm_27.TU.AmTr_v1.0_scaffold00007.52 0.9178475406745118 71 AMTR_s00013p00056780 MEI1, evm_27.TU.AmTr_v1.0_scaffold00013.20 0.9178369379447746 72 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 NRPC2, evm_27.TU.AmTr_v1.0_scaffold00020.118 0.917829243357088 73 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase PDS3, PDS, PDE226, evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9177296174665186 74 AMTR_s00003p00122400 Lipid metabolism.lipid degradation.fatty acid degradation.alternative beta-oxidation.monofunctionial hydroxyacyl-CoA dehydrogenase IBR3, evm_27.TU.AmTr_v1.0_scaffold00003.89 0.9174852182680195 75 AMTR_s00033p00150780 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana ATX1, SDG27, evm_27.TU.AmTr_v1.0_scaffold00033.97 0.9170504557626744 76 AMTR_s00065p00210150 evm_27.TU.AmTr_v1.0_scaffold00065.206 0.9164868482564752 81 AMTR_s00029p00208280 Cell wall.sporopollenin.exine wall formation.DEX1 exine patterning factor DEX1, evm_27.TU.AmTr_v1.0_scaffold00029.300 0.9164734904880366 82 AMTR_s00011p00229900 evm_27.TU.AmTr_v1.0_scaffold00011.109 0.9161208353129134 85 AMTR_s00008p00099050 evm_27.TU.AmTr_v1.0_scaffold00008.35 0.9159895952859257 86 AMTR_s00186p00032060 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 2 NRPA2, evm_27.TU.AmTr_v1.0_scaffold00186.12 0.9157680164939643 87 AMTR_s00003p00144740 evm_27.TU.AmTr_v1.0_scaffold00003.116 0.9154613186944981 89 AMTR_s00044p00091520 Callose synthase 9 OS=Arabidopsis thaliana ATGSL10, gsl10, CALS9, evm_27.TU.AmTr_v1.0_scaffold00044.64 0.9154040708666055 90 AMTR_s00059p00171720 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00059.168 0.9153618769460105 91 AMTR_s00045p00203910 Chromatin organisation.histone modifications.histone arginine methylation.PRMT4 histone methylase PRMT4B, ATPRMT4B, evm_27.TU.AmTr_v1.0_scaffold00045.269 0.9152052688393901 93 AMTR_s00049p00219600 evm_27.TU.AmTr_v1.0_scaffold00049.255 0.9151997495026117 94 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B GYRB1, evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9151490674029494 95 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit ATLEUC1, IIL1, evm_27.TU.AmTr_v1.0_scaffold00039.46 0.9149207637061605 96 AMTR_s00156p00058400 Cell cycle.organelle machineries.organelle fission.plastid division.FtsZ prokaryotic-tubulin filaments.FtsZ1 component ATFTSZ1-1, FTSZ1-1, CPFTSZ, evm_27.TU.AmTr_v1.0_scaffold00156.29 0.9146956256282077 97 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14, evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9143035168057528 98 AMTR_s00009p00253500 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.266 0.9142893383624031 99 AMTR_s00070p00097310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase CBL, evm_27.TU.AmTr_v1.0_scaffold00070.48 0.913835334898076 100