Sequence Description Alias PCC hrr AMTR_s00058p00177950 evm_27.TU.AmTr_v1.0_scaffold00058.168 0.9554720538347619 6 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9539288587390451 8 AMTR_s00110p00037960 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00110.12 0.9483508951651629 29 AMTR_s00025p00188170 RNA processing.RNA splicing.U12-type-intron-specific minor spliceosome.U11 small nuclear ribonucleoprotein particle (snRNP).U11-59K snRNP component evm_27.TU.AmTr_v1.0_scaffold00025.229 0.9476921708406386 4 AMTR_s00036p00173790 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00036.85 0.9472243723080006 5 AMTR_s00060p00196600 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component evm_27.TU.AmTr_v1.0_scaffold00060.141 0.9470635260383863 7 AMTR_s00090p00109700 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.ketoacyl-ACP synthase (mtKAS) evm_27.TU.AmTr_v1.0_scaffold00090.50 0.9452357737808316 9 AMTR_s02210p00008540 AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold02210.1 0.9449944040708917 8 AMTR_s00092p00157140 evm_27.TU.AmTr_v1.0_scaffold00092.133 0.9443031772417348 9 AMTR_s00059p00133780 Protein modification.N-linked glycosylation.oligosaccharyl transferase (OST) complex.DGL1 component DGL1, evm_27.TU.AmTr_v1.0_scaffold00059.112 0.9436114160926347 10 AMTR_s00041p00073060 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol dehydrogenase HDH, HISN8, ATHDH, evm_27.TU.AmTr_v1.0_scaffold00041.43 0.9430210452169495 11 AMTR_s00045p00068210 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component evm_27.TU.AmTr_v1.0_scaffold00045.55 0.9427010250094972 58 AMTR_s00101p00084550 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF77/Rna14 component ATCSTF77, CSTF77, evm_27.TU.AmTr_v1.0_scaffold00101.61 0.9411851345718375 18 AMTR_s00133p00115730 Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana AAE18, evm_27.TU.AmTr_v1.0_scaffold00133.60 0.9406738831958431 14 AMTR_s00020p00038010 Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00020.9 0.9404127416855819 32 AMTR_s00032p00225290 evm_27.TU.AmTr_v1.0_scaffold00032.241 0.9402508869942054 16 AMTR_s00037p00070040 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00037.19 0.9399699209183412 35 AMTR_s00039p00226980 PRP39, evm_27.TU.AmTr_v1.0_scaffold00039.208 0.9394375314271785 18 AMTR_s00006p00266490 Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana AAE17, evm_27.TU.AmTr_v1.0_scaffold00006.289 0.9390294907775298 19 AMTR_s00003p00122400 Lipid metabolism.lipid degradation.fatty acid degradation.alternative beta-oxidation.monofunctionial hydroxyacyl-CoA dehydrogenase IBR3, evm_27.TU.AmTr_v1.0_scaffold00003.89 0.9385195656102504 20 AMTR_s00006p00149820 Cell cycle.interphase.DNA replication.preinitiation.origin recognition complex.ORC4 component ATORC4, ORC4, evm_27.TU.AmTr_v1.0_scaffold00006.57 0.9383169910580442 21 AMTR_s00182p00037730 Cell cycle.organelle machineries.organelle fission.plastid division.ARC6 FtsZ assembly regulator ARC6, evm_27.TU.AmTr_v1.0_scaffold00182.17 0.9380004666713841 22 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OEP80, EMB213, TOC75, ATOEP80, evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9373985513945284 23 AMTR_s00159p00062070 RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.AP2-type transcription factor evm_27.TU.AmTr_v1.0_scaffold00159.24 0.9372330132085546 24 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme NAD-ME1, evm_27.TU.AmTr_v1.0_scaffold00002.109 0.9369028711352788 25 AMTR_s00104p00054580 Vesicle trafficking.endomembrane trafficking.post-Golgi trafficking.SCD complex.SCD1 protein SCD1, evm_27.TU.AmTr_v1.0_scaffold00104.16 0.9366359421688172 26 AMTR_s00049p00115800 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG30, ATX2, evm_27.TU.AmTr_v1.0_scaffold00049.91 0.9363949087174528 34 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.935877564989482 29 AMTR_s00142p00102260 Protein modification.acetylation.NatA-type N-terminal acetylase complex.NAA15 auxiliary component EMB2753, evm_27.TU.AmTr_v1.0_scaffold00142.67 0.9341226915467338 59 AMTR_s00023p00062480 Protein modification.acetylation.NatB-type N-terminal acetylase complex.NAA25 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00023.28 0.9338631549027862 50 AMTR_s00106p00098180 evm_27.TU.AmTr_v1.0_scaffold00106.68 0.932820142774904 36 AMTR_s00025p00200390 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase HEN2, evm_27.TU.AmTr_v1.0_scaffold00025.254 0.9328041927635403 57 AMTR_s00056p00038090 RNA processing.ribonuclease activities.RNase Z endoribonuclease TRZ4, evm_27.TU.AmTr_v1.0_scaffold00056.21 0.9323727616138031 36 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.9322003381954486 34 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter CLT2, evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9319092787136742 35 AMTR_s00013p00247130 Protein modification.O-linked glycosylation.serine/threonine O-linked glycosylation.SEC N-acetylglucosamine transferase SEC, evm_27.TU.AmTr_v1.0_scaffold00013.214 0.9318191161254162 38 AMTR_s00046p00164820 Protein modification.acetylation.NatC-type N-terminal acetylase complex.NAA35 auxiliary component ATMAK10, MAK10, evm_27.TU.AmTr_v1.0_scaffold00046.88 0.9315094602653246 37 AMTR_s00003p00241010 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.MAP-kinase phosphatase PHS1, evm_27.TU.AmTr_v1.0_scaffold00003.257 0.9314555301073318 38 AMTR_s00032p00047690 evm_27.TU.AmTr_v1.0_scaffold00032.26 0.9314483922875725 39 AMTR_s00019p00236090 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component PR 65, PP2AA2, PDF1, evm_27.TU.AmTr_v1.0_scaffold00019.329 0.9312201672927841 40 AMTR_s00013p00056780 MEI1, evm_27.TU.AmTr_v1.0_scaffold00013.20 0.9311382624877784 41 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.930930149606482 42 AMTR_s00009p00265450 MLO-like protein 14 OS=Arabidopsis thaliana ATMLO14, MLO14, evm_27.TU.AmTr_v1.0_scaffold00009.382 0.9300260651719537 43 AMTR_s00003p00020850 Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana MIRO1, emb2473, evm_27.TU.AmTr_v1.0_scaffold00003.6 0.9291561284852388 44 AMTR_s00036p00170130 Nudix hydrolase 3 OS=Arabidopsis thaliana atnudt3, NUDT3, evm_27.TU.AmTr_v1.0_scaffold00036.84 0.929104836791053 45 AMTR_s00057p00025530 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.9 0.9289095244360343 46 AMTR_s00058p00048170 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.phosphoribosyanthranilate isomerase TRP6, PAI1, evm_27.TU.AmTr_v1.0_scaffold00058.19 0.9287723357859009 47 AMTR_s00016p00133200 evm_27.TU.AmTr_v1.0_scaffold00016.91 0.9287211562654535 48 AMTR_s00020p00234520 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323, evm_27.TU.AmTr_v1.0_scaffold00020.106 0.928620127985779 49 AMTR_s00090p00135570 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF6 component ATTAF6, TAF6, TAFII59, evm_27.TU.AmTr_v1.0_scaffold00090.68 0.9285871287682611 50 AMTR_s00119p00132020 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class IV ARF-GAP protein ZIGA4, AGD14, evm_27.TU.AmTr_v1.0_scaffold00119.107 0.9283616073850797 51 AMTR_s00081p00160620 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.head module.MED17 component evm_27.TU.AmTr_v1.0_scaffold00081.69 0.9283062591904968 52 AMTR_s00070p00097310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase CBL, evm_27.TU.AmTr_v1.0_scaffold00070.48 0.9278221554012204 53 AMTR_s00024p00154360 Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica ACD1, D-CDES, ATACD1, evm_27.TU.AmTr_v1.0_scaffold00024.110 0.9277173982574948 54 AMTR_s00002p00043100 Vesicle trafficking.target membrane tethering.COG (Conserved-Oligomeric Golgi) complex.COG6 component evm_27.TU.AmTr_v1.0_scaffold00002.17 0.9275936903231796 55 AMTR_s00061p00073040 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.48 0.9270652290265886 56 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component EMB1265, ATCPSF100, CPSF100, ESP5, evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9269970405737468 73 AMTR_s00153p00060550 Probable methyltransferase PMT23 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00153.27 0.9267146511206816 58 AMTR_s00147p00073200 evm_27.TU.AmTr_v1.0_scaffold00147.35 0.9266424690590608 59 AMTR_s00114p00022520 ACT domain-containing protein ACR12 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00114.8 0.9261814495958471 60 AMTR_s00048p00073770 evm_27.TU.AmTr_v1.0_scaffold00048.33 0.9261639324814561 61 AMTR_s00007p00267150 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP107 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00007.380 0.9261230963174241 62 AMTR_s00119p00089670 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC6-type golgin GC6, MAG4, evm_27.TU.AmTr_v1.0_scaffold00119.69 0.9259365297566207 63 AMTR_s00080p00100430 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit a VHA-A1, evm_27.TU.AmTr_v1.0_scaffold00080.37 0.9257003367318577 64 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor AHK2, HK2, evm_27.TU.AmTr_v1.0_scaffold00028.85 0.925559001821707 65 AMTR_s00041p00141370 evm_27.TU.AmTr_v1.0_scaffold00041.101 0.9255587686305691 66 AMTR_s00028p00237040 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.124 0.925482039984033 67 AMTR_s00062p00074600 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A2 activities.pPLA2-I-type phospholipase A2 evm_27.TU.AmTr_v1.0_scaffold00062.46 0.9254565678811733 68 AMTR_s00175p00051190 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00175.23 0.9246295719648508 69 AMTR_s00049p00194600 evm_27.TU.AmTr_v1.0_scaffold00049.205 0.9245940196580135 70 AMTR_s00059p00208660 evm_27.TU.AmTr_v1.0_scaffold00059.241 0.9244673418888123 71 AMTR_s00138p00108220 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component evm_27.TU.AmTr_v1.0_scaffold00138.52 0.9243713817516367 72 AMTR_s00014p00253620 evm_27.TU.AmTr_v1.0_scaffold00014.137 0.92407365603423 73 AMTR_s00057p00150120 evm_27.TU.AmTr_v1.0_scaffold00057.136 0.9239021313970904 74 AMTR_s00039p00148640 Cell cycle.cytokinesis.preprophase microtubule organization.CLASP microtubule orientation regulator ATCLASP, CLASP, evm_27.TU.AmTr_v1.0_scaffold00039.100 0.9237497406475262 75 AMTR_s00017p00239150 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana MAA3, evm_27.TU.AmTr_v1.0_scaffold00017.210 0.9235383902956852 76 AMTR_s00057p00019730 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP5 component emb1427, evm_27.TU.AmTr_v1.0_scaffold00057.4 0.923512479131092 77 AMTR_s00042p00115230 DNA damage response.DNA repair mechanisms.photoreactivation.6-4-type photolyase (UVR3) UVR3, evm_27.TU.AmTr_v1.0_scaffold00042.26 0.9234812968377101 78 AMTR_s00038p00151410 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO7 export karyopherin evm_27.TU.AmTr_v1.0_scaffold00038.92 0.9231341278727512 79 AMTR_s00086p00094500 Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana EMB1408, DG1, EMB246, evm_27.TU.AmTr_v1.0_scaffold00086.48 0.9231340705483044 80 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9230856140793086 81 AMTR_s00022p00221290 Clustered mitochondria protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.278 0.9230266351900216 82 AMTR_s00044p00170650 evm_27.TU.AmTr_v1.0_scaffold00044.189 0.9227148696171522 83 AMTR_s00176p00054790 Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana SC35, ATSC35, At-SC35, evm_27.TU.AmTr_v1.0_scaffold00176.28 0.9225330378352296 84 AMTR_s00110p00073830 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp2 RNA helicase ESP3, EMB2733, evm_27.TU.AmTr_v1.0_scaffold00110.39 0.9222911266972597 85 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9222641602234468 86 AMTR_s00004p00140970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana UBP13, evm_27.TU.AmTr_v1.0_scaffold00004.137 0.9220957246825787 87 AMTR_s00059p00138250 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG7 ATG8/12-activating E1 protein ATAPG7, APG7, ATG7, ATATG7, evm_27.TU.AmTr_v1.0_scaffold00059.120 0.9220874532800697 88 AMTR_s00044p00068470 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.zinc cation transporter (Zn-CDF-type) evm_27.TU.AmTr_v1.0_scaffold00044.39 0.9220088278693936 89 AMTR_s00024p00070750 evm_27.TU.AmTr_v1.0_scaffold00024.29 0.921983135819259 90 AMTR_s00030p00083820 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii LRS1, evm_27.TU.AmTr_v1.0_scaffold00030.33 0.9218401128059959 91 AMTR_s00140p00082700 evm_27.TU.AmTr_v1.0_scaffold00140.38 0.9216688909032148 92 AMTR_s00032p00163130 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VIII kinase families.LRR-VIII-2 kinase evm_27.TU.AmTr_v1.0_scaffold00032.136 0.9215901285424548 93 AMTR_s00024p00216120 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP7 assembly factor evm_27.TU.AmTr_v1.0_scaffold00024.201 0.9214747621725672 94 AMTR_s00033p00224700 BEACH domain-containing protein B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.211 0.9209438822158224 95 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 NRPC2, evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9206400648567433 96 AMTR_s00009p00184050 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) ATPARP2, PARP2, evm_27.TU.AmTr_v1.0_scaffold00009.114 0.9198809135547344 97 AMTR_s00048p00224070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED34 component MED34, ATRECQ2, RECQL2, evm_27.TU.AmTr_v1.0_scaffold00048.212 0.9196679017040926 98 AMTR_s00101p00130320 Cytoskeleton.microfilament network.actin organisation.SCAB regulator protein evm_27.TU.AmTr_v1.0_scaffold00101.104 0.9196169357164314 99 AMTR_s00009p00253500 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.266 0.9192276619794294 100