Sequence Description Alias PCC hrr AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 NRPA1, evm_27.TU.AmTr_v1.0_scaffold00022.362 0.9584898421644081 1 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2, evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9549846467325124 2 AMTR_s00148p00090060 Helicase protein MOM1 OS=Arabidopsis thaliana MOM1, MOM, evm_27.TU.AmTr_v1.0_scaffold00148.61 0.9526104251802204 3 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9504650488883166 4 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9497605593592334 5 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9468293387046172 7 AMTR_s00013p00056780 MEI1, evm_27.TU.AmTr_v1.0_scaffold00013.20 0.942659091504175 9 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor LUG, RON2, evm_27.TU.AmTr_v1.0_scaffold00122.38 0.9386068380572704 10 AMTR_s00059p00171720 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00059.168 0.9376651601314266 20 AMTR_s00012p00234420 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.CRN/MAC10 component evm_27.TU.AmTr_v1.0_scaffold00012.192 0.9370719473945011 10 AMTR_s00047p00175730 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00047.99 0.9361887776143091 11 AMTR_s00009p00253500 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.266 0.9360986251019012 17 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OEP80, EMB213, TOC75, ATOEP80, evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9355123474416397 25 AMTR_s00110p00073830 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp2 RNA helicase ESP3, EMB2733, evm_27.TU.AmTr_v1.0_scaffold00110.39 0.9352833295655477 19 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14, evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9349853749751628 20 AMTR_s00044p00164390 Histone-binding protein MSI1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.179 0.9349385569317138 16 AMTR_s00022p00221290 Clustered mitochondria protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.278 0.9334428098437255 24 AMTR_s00147p00036340 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease DegP7, evm_27.TU.AmTr_v1.0_scaffold00147.15 0.93328226258915 18 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.9329663302240965 19 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component ESP4, evm_27.TU.AmTr_v1.0_scaffold00007.52 0.9327443766320455 20 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1 0.932622793493681 21 AMTR_s00138p00108220 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component evm_27.TU.AmTr_v1.0_scaffold00138.52 0.9324944732663526 22 AMTR_s00014p00034060 Cell wall.callose.callose synthase GSL04, atgsl4, gsl04, ATGSL04, evm_27.TU.AmTr_v1.0_scaffold00014.10 0.932432353345143 27 AMTR_s00062p00102370 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP POLGAMMA2, evm_27.TU.AmTr_v1.0_scaffold00062.75 0.9312957772175853 24 AMTR_s00011p00229900 evm_27.TU.AmTr_v1.0_scaffold00011.109 0.9307766333249315 25 AMTR_s00104p00047720 Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.13 0.93063887883386 26 AMTR_s00060p00130340 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin NUP155, evm_27.TU.AmTr_v1.0_scaffold00060.71 0.928955156924316 27 AMTR_s00017p00141460 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.DMI1/Pollux/Castor calcium cation channel evm_27.TU.AmTr_v1.0_scaffold00017.65 0.9286927314112803 28 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.92865011739726 29 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel GLR3.3, ATGLR3.3, evm_27.TU.AmTr_v1.0_scaffold00044.128 0.9276894624705068 30 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component EMB1265, ATCPSF100, CPSF100, ESP5, evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9273128170376664 71 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component RPN1A, ATRPN1A, evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9264684235341996 32 AMTR_s00004p00092300 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component evm_27.TU.AmTr_v1.0_scaffold00004.75 0.925586506743746 33 AMTR_s00039p00148640 Cell cycle.cytokinesis.preprophase microtubule organization.CLASP microtubule orientation regulator ATCLASP, CLASP, evm_27.TU.AmTr_v1.0_scaffold00039.100 0.9247623895154525 71 AMTR_s00002p00059110 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB4 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00002.23 0.9247539702221235 35 AMTR_s00087p00144100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00087.47 0.9246908866973679 36 AMTR_s00092p00157140 evm_27.TU.AmTr_v1.0_scaffold00092.133 0.9239289167943328 69 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9237518593001744 80 AMTR_s00047p00125370 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease EMB80, EMB1275, DEK1, ATDEK1, evm_27.TU.AmTr_v1.0_scaffold00047.50 0.923707203076801 39 AMTR_s00186p00032060 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 2 NRPA2, evm_27.TU.AmTr_v1.0_scaffold00186.12 0.9235473797393366 41 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9234948060306514 42 AMTR_s00003p00233250 evm_27.TU.AmTr_v1.0_scaffold00003.233 0.9233884879789734 43 AMTR_s00086p00132870 evm_27.TU.AmTr_v1.0_scaffold00086.75 0.9233869294855953 44 AMTR_s00004p00261460 Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.256 0.9233005979739416 45 AMTR_s00069p00119460 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana SLK2, evm_27.TU.AmTr_v1.0_scaffold00069.80 0.9232926067966246 46 AMTR_s00140p00082700 evm_27.TU.AmTr_v1.0_scaffold00140.38 0.9229421498198923 47 AMTR_s00173p00060580 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00173.16 0.9225325514129503 48 AMTR_s00029p00113670 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component evm_27.TU.AmTr_v1.0_scaffold00029.124 0.9221404736345963 57 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.9221388767843529 50 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component ATTIF3A1, ATEIF3A-1, EIF3A-1, TIF3A1, EIF3A, evm_27.TU.AmTr_v1.0_scaffold00111.21 0.9221345680163416 51 AMTR_s00106p00133350 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component evm_27.TU.AmTr_v1.0_scaffold00106.104 0.9220455245849675 52 AMTR_s00007p00148280 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC1 component EMB2771, evm_27.TU.AmTr_v1.0_scaffold00007.111 0.9220086135189549 53 AMTR_s00009p00260060 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) ATKEA2, KEA2, evm_27.TU.AmTr_v1.0_scaffold00009.318 0.9218891683676077 55 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.921782072975255 56 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9216473853705482 57 AMTR_s00040p00226100 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor RAD5, evm_27.TU.AmTr_v1.0_scaffold00040.267 0.9204095949269991 58 AMTR_s00066p00084950 ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.66 0.9203870734386441 59 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9202110333471759 94 AMTR_s00006p00267510 Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana ATMBD9, MBD9, evm_27.TU.AmTr_v1.0_scaffold00006.303 0.9201195180226995 61 AMTR_s00104p00054580 Vesicle trafficking.endomembrane trafficking.post-Golgi trafficking.SCD complex.SCD1 protein SCD1, evm_27.TU.AmTr_v1.0_scaffold00104.16 0.9199801176248701 69 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 NRPC2, evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9198607282344988 63 AMTR_s00013p00152000 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GRV2, KAM2, evm_27.TU.AmTr_v1.0_scaffold00013.78 0.9196481198653212 64 AMTR_s00016p00255950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00016.338 0.9195742946368901 65 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme NAD-ME1, evm_27.TU.AmTr_v1.0_scaffold00002.109 0.919366411416988 66 AMTR_s00013p00056220 MEI1, evm_27.TU.AmTr_v1.0_scaffold00013.19 0.9193622909197973 67 AMTR_s00085p00089520 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component SRCAP, PIE1, chr13, evm_27.TU.AmTr_v1.0_scaffold00085.48 0.9189437503529287 68 AMTR_s00104p00047630 Disease resistance protein RPS2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.12 0.9182183302999455 69 AMTR_s00003p00101050 evm_27.TU.AmTr_v1.0_scaffold00003.65 0.9181980258951217 80 AMTR_s00025p00188660 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) evm_27.TU.AmTr_v1.0_scaffold00025.230 0.9180722972553347 83 AMTR_s00086p00165640 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor PKL, GYM, CHR6, SSL2, CHD3, evm_27.TU.AmTr_v1.0_scaffold00086.104 0.9179565470005526 89 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor AHK2, HK2, evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9173145146607895 73 AMTR_s00179p00033790 AT PRP39-2, PRP39-2, evm_27.TU.AmTr_v1.0_scaffold00179.7 0.9169340746920063 75 AMTR_s00044p00033620 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Etl1 chromatin remodeling factor CHA19, CHR19, ETL1, evm_27.TU.AmTr_v1.0_scaffold00044.10 0.9168397175103513 76 AMTR_s00159p00062070 RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.AP2-type transcription factor evm_27.TU.AmTr_v1.0_scaffold00159.24 0.9162129466218774 77 AMTR_s00059p00074580 evm_27.TU.AmTr_v1.0_scaffold00059.49 0.9160690404810414 78 AMTR_s00025p00149970 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component ATLIG4, LIG4, evm_27.TU.AmTr_v1.0_scaffold00025.169 0.9159874715041868 79 AMTR_s00088p00046280 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00088.24 0.9154429374476784 80 AMTR_s00091p00075810 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00091.25 0.9153881607618176 81 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component TIC110, ATTIC110, evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9151646855982152 83 AMTR_s00066p00089100 SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana SUA, evm_27.TU.AmTr_v1.0_scaffold00066.69 0.9145646298211025 84 AMTR_s00002p00079350 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component EMB2016, evm_27.TU.AmTr_v1.0_scaffold00002.39 0.9137779015846269 85 AMTR_s00048p00175550 NOV, evm_27.TU.AmTr_v1.0_scaffold00048.130 0.9136338568761174 87 AMTR_s00079p00078710 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor ATHPCAT2, HAC1, ATHAC1, PCAT2, evm_27.TU.AmTr_v1.0_scaffold00079.26 0.913309869976592 88 AMTR_s00007p00201600 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.177 0.9115203408480347 90 AMTR_s00009p00184050 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) ATPARP2, PARP2, evm_27.TU.AmTr_v1.0_scaffold00009.114 0.9114674430453086 92 AMTR_s00047p00208850 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component TTN8, ATSMC1, SMC1, evm_27.TU.AmTr_v1.0_scaffold00047.148 0.9111606661562507 93 AMTR_s00004p00140970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana UBP13, evm_27.TU.AmTr_v1.0_scaffold00004.137 0.9110237626029158 94 AMTR_s00053p00190690 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80, evm_27.TU.AmTr_v1.0_scaffold00053.139 0.9109434202349966 95 AMTR_s00092p00098010 ATILP1, ILP1, evm_27.TU.AmTr_v1.0_scaffold00092.55 0.9106435645669083 96 AMTR_s00061p00131900 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS, evm_27.TU.AmTr_v1.0_scaffold00061.110 0.9106168996123013 97 AMTR_s00131p00018630 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component evm_27.TU.AmTr_v1.0_scaffold00131.4 0.9104193567981588 99