Sequence Description Alias PCC hrr AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLB6, ISPH, HDR, evm_27.TU.AmTr_v1.0_scaffold00059.146 0.9264833615338611 9 AMTR_s00021p00241290 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.WTF1 basal splicing factor WTF1, AtWTF1, evm_27.TU.AmTr_v1.0_scaffold00021.253 0.9247829971799273 2 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana AAE15, evm_27.TU.AmTr_v1.0_scaffold00117.48 0.9201810017230793 9 AMTR_s00078p00158650 evm_27.TU.AmTr_v1.0_scaffold00078.142 0.9150208949358549 4 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase SQD1, evm_27.TU.AmTr_v1.0_scaffold00101.37 0.9118794471278007 13 AMTR_s00078p00065640 RFC3, evm_27.TU.AmTr_v1.0_scaffold00078.39 0.9083581940870131 6 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica RH39, evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9069727840014228 30 AMTR_s00002p00212650 Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor PMSR4, evm_27.TU.AmTr_v1.0_scaffold00002.223 0.9059574238177005 8 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) ATRCCR, ACD2, evm_27.TU.AmTr_v1.0_scaffold00132.27 0.9059412965653414 9 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.903552081154016 22 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.9029059865212519 13 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.9011644727183059 25 AMTR_s00085p00110520 evm_27.TU.AmTr_v1.0_scaffold00085.68 0.8964426506268625 13 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8864914710773032 51 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.8861693481879389 34 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.8837390692869865 47 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component ATCAF1, CAF1, evm_27.TU.AmTr_v1.0_scaffold00056.26 0.8826351202283531 53 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase IM1, IM, evm_27.TU.AmTr_v1.0_scaffold00074.38 0.8812514379118216 18 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.8808953803651625 35 AMTR_s00002p00259470 evm_27.TU.AmTr_v1.0_scaffold00002.436 0.8802619797366468 20 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB3, CLPB-P, APG6, evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8791239954708227 41 AMTR_s00077p00122240 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00077.115 0.8757649268708312 23 AMTR_s00100p00127450 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00100.46 0.8747864507450688 25 AMTR_s00024p00241140 Protein degradation.peptidase families.cysteine-type peptidase activities.papain-type protease evm_27.TU.AmTr_v1.0_scaffold00024.285 0.8724258520421679 27 AMTR_s00065p00179810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein CLPB4, CLPB-M, HSP98.7, evm_27.TU.AmTr_v1.0_scaffold00065.151 0.8694407196920819 28 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.8674801038759086 86 AMTR_s00001p00178450 Protein modification.disulfide bond formation.chloroplast.thiol-disulfide oxidoreductase (LTO1) evm_27.TU.AmTr_v1.0_scaffold00001.171 0.865841968378426 45 AMTR_s00024p00200150 YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana YLMG1-2, ATYLMG1-2, evm_27.TU.AmTr_v1.0_scaffold00024.175 0.8635058728082108 36 AMTR_s00140p00074640 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.pheophorbide a oxygenase (PAO) ACD1, PAO, LLS1, evm_27.TU.AmTr_v1.0_scaffold00140.32 0.8629716038493493 39 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8627353790713371 97 AMTR_s00022p00253450 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase ATCCD1, CCD1, NCED1, ATNCED1, evm_27.TU.AmTr_v1.0_scaffold00022.400 0.8606692757637033 43 AMTR_s00065p00031420 Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.13 0.8564959219803887 51 AMTR_s00012p00060770 Redox homeostasis.low-molecular-weight scavengers.glutathione metabolism.glutathione degradation.oxoprolinase OXP1, evm_27.TU.AmTr_v1.0_scaffold00012.23 0.8562091992505604 53 AMTR_s00071p00117740 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein cpHsc70-1, evm_27.TU.AmTr_v1.0_scaffold00071.92 0.8548846988108721 79 AMTR_s00068p00127460 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52, evm_27.TU.AmTr_v1.0_scaffold00068.87 0.8544995656345956 62 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8538105309745885 81 AMTR_s00099p00113800 Chromatin organisation.DNA methylation.non-canonical RNA-directed DNA methylation.SGS3 stabilization factor ATSGS3, SGS3, evm_27.TU.AmTr_v1.0_scaffold00099.98 0.8530716456243292 58 AMTR_s00030p00124490 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.SUF-B component ATNAP1, ATABC1, ABC1, LAF6, evm_27.TU.AmTr_v1.0_scaffold00030.74 0.8527560037862244 59 AMTR_s00058p00104900 evm_27.TU.AmTr_v1.0_scaffold00058.59 0.8520089034655853 60 AMTR_s00057p00090910 evm_27.TU.AmTr_v1.0_scaffold00057.66 0.851685840285193 62 AMTR_s00029p00159160 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.190 0.8511327093173713 63 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.8502575910741487 98 AMTR_s00010p00256310 evm_27.TU.AmTr_v1.0_scaffold00010.391 0.8492624773228484 67 AMTR_s00088p00106710 evm_27.TU.AmTr_v1.0_scaffold00088.72 0.8490083154904893 70 AMTR_s00005p00168970 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.PWD phosphoglucan, water dikinase ATGWD3, OK1, PWD, evm_27.TU.AmTr_v1.0_scaffold00005.53 0.8483145291264119 72 AMTR_s00022p00127970 evm_27.TU.AmTr_v1.0_scaffold00022.120 0.8480955732542284 73 AMTR_s00106p00071130 Senescence-associated protein OSA15, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00106.45 0.8479313015783712 74 AMTR_s00007p00247090 evm_27.TU.AmTr_v1.0_scaffold00007.270 0.8477425368945766 82 AMTR_s00046p00227230 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.167 0.8467748014112616 91 AMTR_s00021p00243800 Cell wall.cutin and suberin.cuticular lipid formation.acyl-reduction pathway.wax ester synthase and diacylglycerol acyltransferase evm_27.TU.AmTr_v1.0_scaffold00021.259 0.8464984442917988 78 AMTR_s00007p00141970 Bifunctional monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana CXIP2, ATGRX2, evm_27.TU.AmTr_v1.0_scaffold00007.93 0.845701170449516 79 AMTR_s00011p00231930 Pheophytinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.113 0.8448867882431875 86 AMTR_s00045p00119660 evm_27.TU.AmTr_v1.0_scaffold00045.117 0.844340200863349 84 AMTR_s00072p00056850 RNA processing.RNA modification.rRNA/tRNA methylation.TRM5 tRNA guanosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00072.25 0.8441589578466248 85 AMTR_s00130p00027180 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00130.6 0.843105188790233 87 AMTR_s00029p00107920 evm_27.TU.AmTr_v1.0_scaffold00029.111 0.8406563390818055 94 AMTR_s00066p00165410 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP81D5, evm_27.TU.AmTr_v1.0_scaffold00066.180 0.8403967108365451 96