Sequence Description Alias PCC hrr AMTR_s00078p00155240 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor evm_27.TU.AmTr_v1.0_scaffold00078.136 0.8932504765728952 3 AMTR_s00006p00248360 Phytohormones.auxin.transport.polar auxin transport.BIG regulator protein DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG, evm_27.TU.AmTr_v1.0_scaffold00006.138 0.893002483718245 7 AMTR_s00004p00023800 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase ATEDR1, EDR1, evm_27.TU.AmTr_v1.0_scaffold00004.8 0.8807320689834452 66 AMTR_s00078p00168060 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00078.157 0.8771680459298697 4 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase emb1507, evm_27.TU.AmTr_v1.0_scaffold00022.105 0.8759260991580556 97 AMTR_s00046p00153230 evm_27.TU.AmTr_v1.0_scaffold00046.81 0.8732170174999426 62 AMTR_s00012p00251030 Pumilio homolog 2 OS=Arabidopsis thaliana APUM2, PUM2, evm_27.TU.AmTr_v1.0_scaffold00012.251 0.8665497945012287 67 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component CCT, CRP, evm_27.TU.AmTr_v1.0_scaffold00009.205 0.8639256641888468 37 AMTR_s00087p00057840 evm_27.TU.AmTr_v1.0_scaffold00087.12 0.8633036664877085 38 AMTR_s00067p00056670 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.CDC5/MAC1 component ATCDC5, ATMYBCDC5, CDC5, evm_27.TU.AmTr_v1.0_scaffold00067.33 0.8630551756042135 10 AMTR_s00033p00211330 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1, evm_27.TU.AmTr_v1.0_scaffold00033.185 0.8625589282977765 19 AMTR_s00040p00171130 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component evm_27.TU.AmTr_v1.0_scaffold00040.153 0.8535571743293858 19 AMTR_s00058p00188470 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB1 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00058.186 0.8514950002878893 20 AMTR_s00149p00102010 evm_27.TU.AmTr_v1.0_scaffold00149.85 0.8509711535015231 56 AMTR_s00002p00269760 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.558 0.849696416143964 82 AMTR_s00110p00122260 evm_27.TU.AmTr_v1.0_scaffold00110.97 0.8494132727149183 17 AMTR_s00108p00115900 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.PWR component evm_27.TU.AmTr_v1.0_scaffold00108.28 0.8488630999458167 19 AMTR_s00051p00079490 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor TPR1, evm_27.TU.AmTr_v1.0_scaffold00051.29 0.8486851730821834 85 AMTR_s00069p00173060 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana MOS1, evm_27.TU.AmTr_v1.0_scaffold00069.150 0.8480909806567724 33 AMTR_s00053p00201040 DnaJ protein P58IPK homolog OS=Arabidopsis thaliana TPR16, evm_27.TU.AmTr_v1.0_scaffold00053.155 0.8461192373521789 61 AMTR_s00007p00182220 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component evm_27.TU.AmTr_v1.0_scaffold00007.146 0.8457912784982005 83 AMTR_s00001p00152770 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1 RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, evm_27.TU.AmTr_v1.0_scaffold00001.137 0.8445568044044326 77 AMTR_s00072p00117380 Cell division control protein 48 homolog D OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.59 0.8440049445632613 99 AMTR_s00049p00063500 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B1-type regulatory component ATB' GAMMA, evm_27.TU.AmTr_v1.0_scaffold00049.40 0.840759435973527 31 AMTR_s00029p00096200 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A1 component evm_27.TU.AmTr_v1.0_scaffold00029.89 0.8404514738607703 97 AMTR_s00155p00079840 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF30/Yth1 component CPSF30, ATCPSF30, evm_27.TU.AmTr_v1.0_scaffold00155.52 0.8402889394668718 80 AMTR_s00066p00134410 FRIGIDA-like protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.129 0.8392299393618662 68 AMTR_s00032p00053220 Phytohormones.ethylene.perception and signal transduction.ETR/ERS-type receptor protein ETR, ETR1, EIN1, AtETR1, evm_27.TU.AmTr_v1.0_scaffold00032.33 0.8384643304884493 77 AMTR_s00099p00081960 Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GRP23, evm_27.TU.AmTr_v1.0_scaffold00099.60 0.837666277708192 84 AMTR_s00066p00148680 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.NIN transcription factor evm_27.TU.AmTr_v1.0_scaffold00066.150 0.8360602925791664 38 AMTR_s00029p00021500 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.4 0.8350840163233574 65 AMTR_s00004p00270220 evm_27.TU.AmTr_v1.0_scaffold00004.293 0.8346007260835786 68 AMTR_s00011p00062910 Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00011.10 0.8327359345065591 41 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein HY3, OOP1, PHYB, evm_27.TU.AmTr_v1.0_scaffold00003.45 0.8320423780713684 51 AMTR_s00153p00065050 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBA-activating E1 protein UBA1, MOS5, ATUBA1, evm_27.TU.AmTr_v1.0_scaffold00153.31 0.8304249120206922 73 AMTR_s00044p00219890 ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.235 0.8251785871181391 52 AMTR_s00027p00244500 Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.150 0.8237629612399469 77 AMTR_s00101p00033020 UBP1-associated protein 2A OS=Arabidopsis thaliana UBA2A, evm_27.TU.AmTr_v1.0_scaffold00101.8 0.8223358167277974 75 AMTR_s00004p00052660 evm_27.TU.AmTr_v1.0_scaffold00004.36 0.8222244394666659 60 AMTR_s00066p00174270 evm_27.TU.AmTr_v1.0_scaffold00066.204 0.8209683786465877 77 AMTR_s00013p00055400 evm_27.TU.AmTr_v1.0_scaffold00013.18 0.8171544679499538 65 AMTR_s00056p00045910 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SKIP/MAC6 component SKIP, evm_27.TU.AmTr_v1.0_scaffold00056.28 0.816158726363786 67 AMTR_s00101p00094580 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B1 component evm_27.TU.AmTr_v1.0_scaffold00101.72 0.815392769840804 72 AMTR_s00078p00186900 FRIGIDA-like protein 4a OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00078.192 0.8146321120180633 77 AMTR_s00049p00211440 Vesicle trafficking.autophagosome formation.cargo recruitment.NBR1 autophagic adapter protein evm_27.TU.AmTr_v1.0_scaffold00049.238 0.8127991890970158 80